Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48030 454 / 9e-158 DNAse I-like superfamily protein (.1) AT3G21530 403 / 4e-137 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008177 [exp] 769 / 0 AT2G48030 486 / 5e-170 DNAse I-like superfamily protein (.1) Lus10042675 [exp] 563 / 0 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10029630 [exp] 550 / 0 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10012772 [exp] 428 / 8e-147 AT3G21530 504 / 2e-177 DNAse I-like superfamily protein (.1) Lus10034003 [exp] 421 / 1e-143 AT3G21530 504 / 2e-176 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136900 [exp] 549 / 0 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G198100 [exp] 430 / 4e-147 AT3G21530 506 / 1e-177 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10027979 pacid=23181232 polypeptide=Lus10027979 locus=Lus10027979.g ID=Lus10027979.BGIv1.0 annot-version=v1.0 ATGTTCAAACTCCTCAACCAGAAACTCCGCCTCCTCTGTTCTCGCCTCCGCCGCCGCCGCCGCCGCCCCTCCAAGATTCAGATAAAGAAATTCGGCAGGC CTGAACCGGTGATCATCGGATCCACTTCTCCTTCTTCGGCGGCGGTTCATCCCAATAAAGCGGAAACAGAGTCGAATCGAATTAAAGTCGCGACATTTAA CGCTGCTCTGTTCTCCATGGCTCCGGCGGTTCCGACGGTGGAGAGTTCATCCAATTTTGATTCAGGATTCGGAAGGAGTAAGAGTTTACTGGACCAGAAT TCCGGTAAAGATCGGCCGATCAAGAGTATACTAAAGCAGTCTCCCCTGCATCCAGTCTCCGATGTCAAAGACGGCGGCAATCTCTCCAAGCAGCAGAGAT TTGCCAAATCGAGGCTGAGGGTTTCAATTAATCTTCCCGACAACGAGATTTCACTGCTGAGGAGCAGGAAGTTGAGCTTCGGAGGAGAAGGCGAGGAAGA CTGCTTCGTTGGCAGCGGAGGCGTGAAAATTGGTACGAAAGCTCCGGCGGCGAGTCGGTGCCGGAGTTTGATTGAATTGGAGAGGTGCGGCGGCGGCGGG AAGAGGACGGTGGTGGATGTTTTGAGAGAGTTGGACGCAGATATTTTGGCGTTGCAGGAAGTGAAAGCAGAGGAAGAGAAATCGATGAGGCCTCTGTCGG ATTTGGCTGCTGCTTTGGGGATGAATTACGTTTTTGCGGAGAGCTGGGCTCCTGAATATGGAAATGCCATTCTGTCCAAGTGGCCGATCCAACGGTCCAC AGCGCAGAAAATTGTCGACGATTCTGATTTCAGGAATGTTCTCAAGGCAACCATCAATGTGCCCAACATAGGGGAAGTCAACTTCCACTGCACCCACTTG GATCATCTCAACGAGTCATGGCGAATGAAGCAAGTGAATGCGATTATGAAGTCGAGCGAAGGGCCCCACCTCTTAGCCGGAGGGCTCAATTCGCTCGACG AAACTGACTATTCTGACGAAAGATGGACCGACATTGTCAAGTACTATGAAGAGATGGGAAAGCCGACGCCAAAGGCTGAAGTGATGAGGTTTTTGAAGAA CAAACAGTACACTGATGCAAAGGATTCTGCCGGTGAATGCGAGTCCGTGGTCATGATAGCCAAAGGCCAAAATGTTCAAGGGACTTGCAAGTACGGAACT CGAGTGGACTACATCGTGGCATCACCGAATTCACCATACAAGTTCGTACCAGGGTCGTACTCGGTTCTATCTTCGAAGGGGACATCTGATCATCACATCG TGAAAGTTGATGTTGTTAAAGTCCAAACCAGCAGTAGTAGTAGTGATAGTCATAGTAGTTACAGAGATCAGCAAAGTGTGAGTAGAAAAGGCAAAGGCAA AACAAAGCACAAGAAACAATTGTGTTGTAACGTTTTAAGTTAA
AA sequence Show only first row Show all	>Lus10027979 pacid=23181232 polypeptide=Lus10027979 locus=Lus10027979.g ID=Lus10027979.BGIv1.0 annot-version=v1.0 MFKLLNQKLRLLCSRLRRRRRRPSKIQIKKFGRPEPVIIGSTSPSSAAVHPNKAETESNRIKVATFNAALFSMAPAVPTVESSSNFDSGFGRSKSLLDQN SGKDRPIKSILKQSPLHPVSDVKDGGNLSKQQRFAKSRLRVSINLPDNEISLLRSRKLSFGGEGEEDCFVGSGGVKIGTKAPAASRCRSLIELERCGGGG KRTVVDVLRELDADILALQEVKAEEEKSMRPLSDLAAALGMNYVFAESWAPEYGNAILSKWPIQRSTAQKIVDDSDFRNVLKATINVPNIGEVNFHCTHL DHLNESWRMKQVNAIMKSSEGPHLLAGGLNSLDETDYSDERWTDIVKYYEEMGKPTPKAEVMRFLKNKQYTDAKDSAGECESVVMIAKGQNVQGTCKYGT RVDYIVASPNSPYKFVPGSYSVLSSKGTSDHHIVKVDVVKVQTSSSSSDSHSSYRDQQSVSRKGKGKTKHKKQLCCNVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48030			DNAse I-like superfamily prote...		Lus10027979 [exp]	0	1
					Lus10004293 [exp]	2.8	0.9621
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	11.7	0.9648
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	19.1	0.9198
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	23.0	0.9611
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	26.4	0.9606
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	27.7	0.9586
					Lus10019223 [exp]	32.6	0.9580
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	34.1	0.9575
AT3G24530			AAA-type ATPase family protein...		Lus10011097 [exp]	34.3	0.8562
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	36.2	0.9573

Compare expression of checked genes

Lus10027979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.