Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63030 206 / 6e-68 MBD4 methyl-CPG-binding domain 4 (.1) AT4G22745 190 / 2e-61 MBD1 methyl-CPG-binding domain 1 (.1) AT5G35330 112 / 1e-30 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) AT4G00416 100 / 1e-26 MBD3 methyl-CPG-binding domain 3 (.1) AT5G35338 72 / 4e-16 MBD12 methyl-CPG-binding domain 12 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008176 [exp] 372 / 2e-133 AT3G63030 204 / 3e-67 methyl-CPG-binding domain 4 (.1) Lus10029631 [exp] 245 / 1e-83 AT3G63030 208 / 1e-69 methyl-CPG-binding domain 4 (.1) Lus10042674 [exp] 243 / 9e-83 AT3G63030 207 / 4e-69 methyl-CPG-binding domain 4 (.1) Lus10021593 [exp] 112 / 2e-29 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Lus10017146 [exp] 110 / 4e-29 AT5G35330 283 / 5e-95 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137100 [exp] 243 / 7e-83 AT3G63030 223 / 4e-75 methyl-CPG-binding domain 4 (.1) Potri.002G212600 [exp] 236 / 5e-80 AT3G63030 221 / 3e-74 methyl-CPG-binding domain 4 (.1) Potri.006G077600 [exp] 108 / 2e-28 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G145500 [exp] 107 / 6e-28 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G146700 [exp] 106 / 2e-27 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10027980 pacid=23181265 polypeptide=Lus10027980 locus=Lus10027980.g ID=Lus10027980.BGIv1.0 annot-version=v1.0 ATGAAAGAGGACAACCAAGCAACTCCTATAGGAAGAGACAGAGAGCTTAGCGAAATGAAAGAGGACAACCAGGGAACTCCTCTAACCTCGTCCAATTCCA AGAAGTCGCGTGGATCAGTCGACACGTACGCGGCGCAGTGCCACGAGTGCCTGAAATGGAGAGTGATGGCTACGGAGGAAGAGTACGAGGAAATCAGAAG CAAGAGCGGCTCGGAGAAGTTCACTTGCAAGGCGAGAGATCTTACTTGCGACACGCCTGCTGATATAGAGTACAACGCTTCTCGGACATGGGTCATAGAC AAGCCTGGAGTTCCCAAAACCCCGAGGGGGTTCAGACGGTACTTGGTGCTTAGACGAGACTTCTCCAAAATGGATGCTTACTATATCACTCCCACGGGCA AGAAACTCCGCACCAGGAACGAAATCGCAGCTTTCGTACAGGCCAACCCACAATACAAAGATGTAAAGCTTGATGACTTCAACTTCACGTCTCCGAAGGT CATGGAAGATACTGTACCGGAGGACGCGAAGAAGAAAGGTGTCAGCTATAACAGTAACAAAAAGAGTAAGATCTCAAAGGAAGATGCTTGA
AA sequence Show only first row Show all	>Lus10027980 pacid=23181265 polypeptide=Lus10027980 locus=Lus10027980.g ID=Lus10027980.BGIv1.0 annot-version=v1.0 MKEDNQATPIGRDRELSEMKEDNQGTPLTSSNSKKSRGSVDTYAAQCHECLKWRVMATEEEYEEIRSKSGSEKFTCKARDLTCDTPADIEYNASRTWVID KPGVPKTPRGFRRYLVLRRDFSKMDAYYITPTGKKLRTRNEIAAFVQANPQYKDVKLDDFNFTSPKVMEDTVPEDAKKKGVSYNSNKKSKISKEDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10027980 [exp]	0	1
AT3G18800			unknown protein		Lus10033505 [exp]	2.0	0.9424
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	5.1	0.9139
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	5.7	0.9473
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	7.1	0.9442
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	7.3	0.9439
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	8.5	0.9328
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	12.0	0.9389
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	14.7	0.9336
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10006568 [exp]	14.7	0.9198
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10011168 [exp]	14.9	0.8389

Compare expression of checked genes

Lus10027980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.