Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 237 / 1e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008175 [exp] 288 / 2e-90 AT2G48060 1855 / 0.0 unknown protein Lus10035352 [exp] 207 / 2e-62 AT2G48060 720 / 0.0 unknown protein Lus10029968 [exp] 141 / 4e-43 AT2G48060 241 / 6e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137200 [exp] 269 / 5e-84 AT2G48060 3339 / 0.0 unknown protein Potri.005G037700 [exp] 214 / 1e-64 AT2G48060 2623 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12166 [flax] [poplar] Piezo_RRas_bdg Piezo non-specific cation channel, R-Ras-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027981 pacid=23181204 polypeptide=Lus10027981 locus=Lus10027981.g ID=Lus10027981.BGIv1.0 annot-version=v1.0 ATGGTTCCGCTAACAGCTTTAGGATATATAATGTCTATCCGAGATACTTTCGAGTCACCGGCTCTGGTAAATTCAGTTAGTGCGGATCTCATCCTGAACC GTGGAAATTTCAGCTGGTGGATGTTCTATGACGTCAATTCTAGGGATGTAGGCGGCTGTGGAGGCTTGACTGGACCCACAGCCGCCATAGTATCTGAGGA AACCCCACCACAGGGTATCCTTGGTGACACCATTAGCAAGTTCAGCATCTGGGGTCTCTACATTACCTTTGTGCTTGCTGTGGGTCGATTCATCAGGCTG CAGTGTTCCGACTTGAGAATGAGAATACCATACGAGAATCTACCATCCTGCGACAGGTTGATAGCCATATGTGAGGACATATATGCTGCAAGAGCAGAAG GTGAGCTTGGAGTCGAAGAAGTCCTTTACTGGACGCTCGTAAAGATATATCGGTCGCCGCACATGCTTCTCGAGTACACAAAACCAGACTAG
AA sequence Show only first row Show all	>Lus10027981 pacid=23181204 polypeptide=Lus10027981 locus=Lus10027981.g ID=Lus10027981.BGIv1.0 annot-version=v1.0 MVPLTALGYIMSIRDTFESPALVNSVSADLILNRGNFSWWMFYDVNSRDVGGCGGLTGPTAAIVSEETPPQGILGDTISKFSIWGLYITFVLAVGRFIRL QCSDLRMRIPYENLPSCDRLIAICEDIYAARAEGELGVEEVLYWTLVKIYRSPHMLLEYTKPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10027981 [exp]	0	1
AT2G24960			unknown protein		Lus10025958 [exp]	5.5	0.6660
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10021879 [exp]	34.5	0.6037
AT3G62200			Putative endonuclease or glyco...		Lus10038041 [exp]	37.5	0.5820
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	56.6	0.6129
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10020158 [exp]	75.0	0.5936
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	75.6	0.5220

Compare expression of checked genes

Lus10027981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.