Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06730 364 / 4e-125 Peroxidase superfamily protein (.1) AT3G49110 357 / 2e-122 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT3G49120 352 / 1e-120 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G32980 352 / 1e-120 Peroxidase superfamily protein (.1) AT4G08770 351 / 3e-120 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT5G06720 350 / 3e-120 ATPA2 peroxidase 2 (.1) AT2G38380 349 / 2e-119 Peroxidase superfamily protein (.1) AT4G08780 347 / 1e-118 Peroxidase superfamily protein (.1) AT2G38390 344 / 1e-117 Peroxidase superfamily protein (.1) AT4G36430 307 / 4e-103 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008174 [exp] 640 / 0 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027984 [exp] 497 / 1e-177 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 484 / 1e-172 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027989 [exp] 482 / 2e-171 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008167 [exp] 479 / 4e-170 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008168 [exp] 456 / 2e-161 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10004163 [exp] 326 / 1e-110 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 311 / 7e-105 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 313 / 1e-103 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 406 / 6e-142 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 401 / 7e-140 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G215001 [exp] 395 / 1e-137 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.001G011200 [exp] 391 / 5e-136 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 391 / 5e-136 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.003G214900 [exp] 389 / 3e-135 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 389 / 3e-135 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 387 / 2e-134 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 384 / 3e-133 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.016G058200 [exp] 354 / 1e-121 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027983 pacid=23181178 polypeptide=Lus10027983 locus=Lus10027983.g ID=Lus10027983.BGIv1.0 annot-version=v1.0 ATGGCTTCACTAATAATGCCTGCTAAGTTTCTAGTTCCTTCTTTGTTGGCATTATTAATGCTGGTTTCTGCTGGTCGTCGGAGCTATGCGCAGCAGCTTA CTCCGACGTACTACGACTCCACTTGTCCCGCTGTTATAAACATCGTCCGTCGGGTCCTCGAAAATGCTGCCGTGGCTGATACCAGGATTTGTGCCAGCCT CATTAGGCTTCACTTCCACGATTGCTTCGTTAGTGGATGTGATGCATCATTGCTGTTGGACAACAGTCCGACGATATTAAGCGAGAAAGAAGCCGTCGGT AATAACAACTCTTGTAGAGGGTATGAAGTCATTGATCAGATGAAGACCCAAATCGAGGCTGCATGTCCAGGGGTCGTTTCCTGCGCCGATATTCTCGCCA TCGCCGCAGAAGAATCCGTTGTTTTGGCAGGAGGGCCATCGTGGGCGGTCCCACTGGGAAGGCTAGACAGCTTGACGGCGAACCAAAGGAGTCTAGTGAC TTCATCCCTTCCTCATATGAATTACACCGTCGATGAGCTCAAAGCTAACTTCGCCGCCGTCGGCCTCGACACCACCGTCGACCTCGTTGCACTCTCAGGT GCTCACACGTTCGGGAGGGTCCAGTGCAAAGGATTCATGTCGCGAATCTACAACTTTAACAACACGGGAGCCCCAGACCCAACACTGAATGCCACGTTGC GCAACTCGCTCCGTCAGCTTTGCCCTGAGGACCGAACCGACATCGTTTTCACGGACCTCGACAAAACAACCCCTAACGCATTCGACTCGGCCTACTTCAG AAACCTCCAGACAGGAGAAGGAATCATCTGGAGCGACCAGGTTCTCTTCTCCACTCCGAGGTCCGACACTGTTGATATTGTCAATAGGTTCGCTGCCAAC GAGACGGCCTTCTTTGAGAGCTTTGTTGATTCGATGATTAGGATGGGGAACATTGCGCCTCCGGCGGGGAGGCAGGGTGAGATTCGGCGGAATTGCAGAG TTGTTAACTCTGCCTCCGTCGTCGGTACGATTAGTGCTTCTCCGGCCGGTTCTGTTAATACTGATGGTTTTGCGAGTGATGTTTGA
AA sequence Show only first row Show all	>Lus10027983 pacid=23181178 polypeptide=Lus10027983 locus=Lus10027983.g ID=Lus10027983.BGIv1.0 annot-version=v1.0 MASLIMPAKFLVPSLLALLMLVSAGRRSYAQQLTPTYYDSTCPAVINIVRRVLENAAVADTRICASLIRLHFHDCFVSGCDASLLLDNSPTILSEKEAVG NNNSCRGYEVIDQMKTQIEAACPGVVSCADILAIAAEESVVLAGGPSWAVPLGRLDSLTANQRSLVTSSLPHMNYTVDELKANFAAVGLDTTVDLVALSG AHTFGRVQCKGFMSRIYNFNNTGAPDPTLNATLRNSLRQLCPEDRTDIVFTDLDKTTPNAFDSAYFRNLQTGEGIIWSDQVLFSTPRSDTVDIVNRFAAN ETAFFESFVDSMIRMGNIAPPAGRQGEIRRNCRVVNSASVVGTISASPAGSVNTDGFASDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06730			Peroxidase superfamily protein...		Lus10027983 [exp]	0	1

Compare expression of checked genes

Lus10027983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.