Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06730 402 / 3e-140 Peroxidase superfamily protein (.1) AT5G06720 394 / 2e-137 ATPA2 peroxidase 2 (.1) AT2G38380 388 / 9e-135 Peroxidase superfamily protein (.1) AT3G49110 384 / 3e-133 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT3G49120 378 / 5e-131 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT4G08770 375 / 5e-130 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT3G32980 375 / 6e-130 Peroxidase superfamily protein (.1) AT2G38390 373 / 4e-129 Peroxidase superfamily protein (.1) AT4G08780 365 / 1e-125 Peroxidase superfamily protein (.1) AT4G36430 312 / 2e-105 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008173 [exp] 657 / 0 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027989 [exp] 578 / 0 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008167 [exp] 570 / 0 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008168 [exp] 517 / 0 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008174 [exp] 514 / 0 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 506 / 0 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 371 / 2e-128 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10025535 [exp] 328 / 9e-110 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 320 / 3e-108 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 452 / 5e-160 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.001G013000 [exp] 440 / 2e-155 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 437 / 2e-154 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214800 [exp] 436 / 7e-154 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011200 [exp] 435 / 1e-153 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 434 / 5e-153 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 429 / 2e-151 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 425 / 2e-149 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.003G215001 [exp] 417 / 2e-146 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.016G058200 [exp] 396 / 2e-138 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027984 pacid=23181122 polypeptide=Lus10027984 locus=Lus10027984.g ID=Lus10027984.BGIv1.0 annot-version=v1.0 ATGGCTTCATATAAGTTTGTAGTTTCTTCGTTGATGGCGATGCTGCTATGCGCCGGAGTGAGCTACGCGCAGCAGCTTACTCCGACGTTCTACAACTCGA CTTGCCCGACTGTAATCAGCATCGTCCGTACAGTTCTTCAGAATGCTGCCATGGCCGATCCCAGAATCGGCGCCAGCCTCAACAGGCTTCACTTCCATGA TTGCTTTGTTAATGGATGTGATGGATCTTTGTTGCTGGACAACAGCGCCACCATACTAAGCGAGAAACAAGCTCTTGGTAACAACAACTCCGTTAGAGGC TTCGACGTCGTTGACCAAATGAAGACCCAAGTCGAAGCCGCTTGCCCCGGGGTTGTTTCTTGTGCCGATATTCTCGCCATCGCTTCCGAGGAATCCGTTG TTTTGGCAGGAGGGCCGTCATGGGCAGTTCCACTAGGAAGGCGAGACAGCTTGACAGCAAACCGGAGTCTAGCAGATGACCAACTTCCTCCTCCATTCTT CACCGTCGATCAGCTCAAAGCTAATTTCGCTACAGTTGGCCTCAACACCACCGAAGACCTCGTTGCACTCTCGGGTGCTCACACATTCGGAAGGGCCCGG TGCGTAGGATTCGTGGGCCGGCTCTACAACTTCAACAGCACGGGCGGCCCAGACCCAACGATCAACGCCACCTTCCTCCAGACACTCCGCCAGATCTGCC CTCAGAACGGAAACGGCAGCGTTTTGACCAACCTTGACCGGACAACCGTCGACGCTTTCGATTCGAACTACTTCACCAATCTCCAGACCCGTGAAGGACT CCTCCAGACTGACCAGGAACTCATCTCCACTCCGGGCTCCGACACTATTGCGCTCGTCAACAGGTTCGCCGCCAACCAGACGGCCTTCTTCCAGAGCTTT GTCAATTCCATGATTAGGATGGGGAACATTCCTCCCCCGCCCGGGAGTCCGAGTGAGATTAGGCGGAATTGCAGGGTCGTTAACCCCGCCTCCGTCGCAG ATACGATTGTTATTACTACCCCGGCGGGTTCTGTTGGTACGGATGGGTTTGCGAGTGATATGTAG
AA sequence Show only first row Show all	>Lus10027984 pacid=23181122 polypeptide=Lus10027984 locus=Lus10027984.g ID=Lus10027984.BGIv1.0 annot-version=v1.0 MASYKFVVSSLMAMLLCAGVSYAQQLTPTFYNSTCPTVISIVRTVLQNAAMADPRIGASLNRLHFHDCFVNGCDGSLLLDNSATILSEKQALGNNNSVRG FDVVDQMKTQVEAACPGVVSCADILAIASEESVVLAGGPSWAVPLGRRDSLTANRSLADDQLPPPFFTVDQLKANFATVGLNTTEDLVALSGAHTFGRAR CVGFVGRLYNFNSTGGPDPTINATFLQTLRQICPQNGNGSVLTNLDRTTVDAFDSNYFTNLQTREGLLQTDQELISTPGSDTIALVNRFAANQTAFFQSF VNSMIRMGNIPPPPGSPSEIRRNCRVVNPASVADTIVITTPAGSVGTDGFASDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06730			Peroxidase superfamily protein...		Lus10027984 [exp]	0	1
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	11.9	0.9363
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	14.5	0.9396
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	23.3	0.9305
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	27.7	0.9101
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	31.8	0.9296
AT3G48990			AMP-dependent synthetase and l...		Lus10039232 [exp]	45.9	0.8790
					Lus10020455 [exp]	46.7	0.9219
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	48.2	0.9203
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10002806 [exp]	51.2	0.8949
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027586 [exp]	55.3	0.9227

Compare expression of checked genes

Lus10027984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.