Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02980 269 / 8e-93 ABP1 endoplasmic reticulum auxin binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029633 [exp] 314 / 9e-111 AT4G02980 273 / 2e-94 endoplasmic reticulum auxin binding protein 1 (.1) Lus10042673 [exp] 295 / 3e-101 AT4G02980 259 / 1e-86 endoplasmic reticulum auxin binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212400 [exp] 298 / 3e-104 AT4G02980 276 / 8e-96 endoplasmic reticulum auxin binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02041 [flax] [poplar] Auxin_BP Auxin binding protein
Representative CDS sequence Show only first row Show all	>Lus10027985 pacid=23181200 polypeptide=Lus10027985 locus=Lus10027985.g ID=Lus10027985.BGIv1.0 annot-version=v1.0 ATGACGGCAATTCAGTTCATCTTCTGCTACTTTATTTCTCTTCCGTTGGCTGCAACTACACTCGCTTCGCAATGCTCAATCAAGGGGTTGCCGCTGGTGC GAAATATTAGCGATCTTCCGCAGGATAACTATGGGATTGGTGGTTTCTCCCATATAACTATTGCTGGTTCTGTTCTGCATGGAATGCAAGAGGTTGAAGT ATGGCTTCAGACGTTTTCTCCAGGCTCAAGCACTCCAATCCACAGGCACTCTTGTGAAGAAGTGTTTGTGGTTCTTAAGGGAAGTGGCAAACTCTATCTT GCTTCCGACTCGCACCAGAAGCATCCCGGAAACCCGCAAGAACACTTGATCTTCCCCAATAGCACATTCCATGTTCCAGTGAATGATGTCCATCAGGTAA GGAATACAAATGAACACGAGGATATGCAGGTGCTCGTCATAATATCTCGGCCCCCAGTGAAACTGTTCATATACGATGACTGGTTCATGCCACATACTGC AGCAAAGCTTAAATTCCCAGTCTTCTGGGATGAAGAATGCCTTCAAACACCAGCAAAAGATGAGCTTTAG
AA sequence Show only first row Show all	>Lus10027985 pacid=23181200 polypeptide=Lus10027985 locus=Lus10027985.g ID=Lus10027985.BGIv1.0 annot-version=v1.0 MTAIQFIFCYFISLPLAATTLASQCSIKGLPLVRNISDLPQDNYGIGGFSHITIAGSVLHGMQEVEVWLQTFSPGSSTPIHRHSCEEVFVVLKGSGKLYL ASDSHQKHPGNPQEHLIFPNSTFHVPVNDVHQVRNTNEHEDMQVLVIISRPPVKLFIYDDWFMPHTAAKLKFPVFWDEECLQTPAKDEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	0	1
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	2.2	0.8495
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	4.2	0.8663
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	4.4	0.8750
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	5.7	0.8541
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	7.2	0.8734
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	9.5	0.8359
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	13.9	0.8433
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	15.5	0.8078
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	15.5	0.8120
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	16.5	0.8350

Compare expression of checked genes

Lus10027985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.