Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 218 / 2e-70 ATPA2 peroxidase 2 (.1) AT2G38380 218 / 2e-70 Peroxidase superfamily protein (.1) AT5G06730 214 / 6e-69 Peroxidase superfamily protein (.1) AT2G38390 204 / 4e-65 Peroxidase superfamily protein (.1) AT3G49110 197 / 2e-62 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT3G49120 195 / 2e-61 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G32980 191 / 5e-60 Peroxidase superfamily protein (.1) AT4G08770 187 / 3e-58 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 178 / 6e-55 Peroxidase superfamily protein (.1) AT5G19880 161 / 1e-48 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008168 [exp] 361 / 2e-126 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027989 [exp] 287 / 2e-97 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10027984 [exp] 286 / 4e-97 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008167 [exp] 286 / 1e-96 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008173 [exp] 270 / 1e-90 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008174 [exp] 246 / 2e-81 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 246 / 3e-81 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 201 / 4e-64 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 164 / 1e-49 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 245 / 6e-81 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 236 / 1e-77 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214900 [exp] 232 / 6e-76 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G013000 [exp] 229 / 6e-75 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 225 / 2e-73 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 221 / 1e-71 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011200 [exp] 221 / 1e-71 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G215001 [exp] 218 / 2e-70 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.001G011000 [exp] 211 / 5e-68 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.016G058200 [exp] 209 / 2e-67 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027988 pacid=23181165 polypeptide=Lus10027988 locus=Lus10027988.g ID=Lus10027988.BGIv1.0 annot-version=v1.0 ATGGAGACCGGATCATCTTTGACAATGCTAGACAGTGTAGCGGCAAACAGGACATTAGCAAATTCAGAACTTCCACCTCCGTTCTTCACCGTCGATCAAC TCAAAGCTACGTTTTCTGCCGTCGGCCTCAACACCACCGTAGACCTCGTTGCTCTCTCAGGAGCCCACACATTTGGAAGGGCCCAATGTGGAAGCTTCAT AAACAGGCTTTACAACTTCAACGGCACAGGAAGCCCAGACCCAACAGTTAACGCCACCTACCTCCAAACACTCCAGCAGCTCTGCCCCCAGAACGGAACC GCCACCGTTTTGGCCAACCTGGACCGCTCCACCGCCGACGGATTCGACTCCACGTACTTCGCCAACCTCCAGACGCAGGAGGGGCCCCTCGACAGCGACC AGGCACTGTTCTCCACTCCAAATTCTGACACCATCGCGCTTGTGAACACGTTCTGCGTCAACCGTACTGCTTTCTTCGAGAGCTTTGTTAACTCCATGAT TAGGATGGGCAACATTCTTCCTCCGGTTGGGACCTCCGGCGAGATTAGGCTCAATTTCAGGGTTATTAACCCTGCTGCTTCTGGTACGGCTGTGATTACT ACTCCGGCCGGTTTTGTTTGTTGA
AA sequence Show only first row Show all	>Lus10027988 pacid=23181165 polypeptide=Lus10027988 locus=Lus10027988.g ID=Lus10027988.BGIv1.0 annot-version=v1.0 METGSSLTMLDSVAANRTLANSELPPPFFTVDQLKATFSAVGLNTTVDLVALSGAHTFGRAQCGSFINRLYNFNGTGSPDPTVNATYLQTLQQLCPQNGT ATVLANLDRSTADGFDSTYFANLQTQEGPLDSDQALFSTPNSDTIALVNTFCVNRTAFFESFVNSMIRMGNILPPVGTSGEIRLNFRVINPAASGTAVIT TPAGFVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	2.0	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	2.8	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	3.5	1.0000
					Lus10024141 [exp]	4.0	1.0000
					Lus10013255 [exp]	5.0	1.0000
					Lus10013259 [exp]	5.5	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	5.9	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	5.9	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	6.3	1.0000
					Lus10028570 [exp]	6.7	1.0000

Compare expression of checked genes

Lus10027988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.