Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 395 / 9e-138 ATPA2 peroxidase 2 (.1) AT2G38380 391 / 4e-136 Peroxidase superfamily protein (.1) AT3G32980 387 / 4e-134 Peroxidase superfamily protein (.1) AT5G06730 387 / 4e-134 Peroxidase superfamily protein (.1) AT3G49120 386 / 4e-134 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT2G38390 382 / 3e-132 Peroxidase superfamily protein (.1) AT3G49110 379 / 4e-131 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 369 / 3e-127 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 363 / 7e-125 Peroxidase superfamily protein (.1) AT5G19880 323 / 2e-109 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008167 [exp] 667 / 0 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10027984 [exp] 568 / 0 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 554 / 0 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008168 [exp] 514 / 0 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008174 [exp] 489 / 2e-174 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 481 / 2e-171 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 370 / 6e-128 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 326 / 2e-110 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 328 / 1e-109 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 452 / 4e-160 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 442 / 3e-156 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011300 [exp] 421 / 5e-148 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 419 / 3e-147 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011200 [exp] 419 / 4e-147 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 418 / 8e-147 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 415 / 2e-145 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G215001 [exp] 415 / 2e-145 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.003G214900 [exp] 412 / 1e-144 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 392 / 1e-136 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10027989 pacid=23181253 polypeptide=Lus10027989 locus=Lus10027989.g ID=Lus10027989.BGIv1.0 annot-version=v1.0 ATGGCTGTAGTGTCGATGTCTTCCCTTGTAGCTTCTTCGTTAGTGGCAATAATGCTATTATTCGCCGGAGCGAGCTACGCGCAGCAGCTCACTCCGGCGT TCTACAACCCGACGTGCCCTAATTTGGCCACCATCGTCCGCCAAGTTCTTCAGAACGCCGCCATGACCGATCCTAGAATCGGCGCCAGCATGATCAGGCT TCACTTCCATGATTGCTTCGTCAATGGATGTGACGGATCAATATTGCTGGACAACAGTGCGACGATAGTAAGTGAGAAACAAGCTGCTCCTAACAACAAC TCCGTTAGAGGGTTCGAAGTCATCGATCAGATGAAGACCCAGGTCGAAGCTGCTTGCCCCGGGATCGTCTCTTGTGCCGATATCCTCACCATCGCTTCTA AAGAATCCGTTGTTTTGGCAGGAGGGCCGTCATGGGCAGTTCCGCTGGGCAGGAGAGACAGCTTGACGGCGAATAGGACTTTAGCAAATTCAGCACTCCC ACCTCCCTTTTTCACTGTCCCTCAGCTCAAAGCCGCTTTCAATGCTGTCGGTCTCAACACCACCACTGATCTAGTTGCCCTCTCTGGTGCTCACACGTTT GGAAGGGCAGCATGCGGAGGATTTGTGGGTCGGCTCTACAACTTCAACAACACAGGAGGCTCAGACCCAACACTCAACGCCACCTTCCTCCAGACCCTCC GCCAGCTCTGCCCTCAGAACGGAAATGCCAGCGTTTTGGCCAACCTCGACAAAACAACTGCCAACACATTCGATTCGGCCTATTTCAGAAACCTCCAGAC CAGAGAAGGTCTCCTCCAGAGTGACCAAGAACTCTTCTCTACTCCAGGCTCTGACACCATCGCCATCGTTAACAGGTTCGCCACAAACCAGACTGCCTTC TTCCAGAGCTTTGTGAACTCCATGATTAGGATGGGAAACATTCGCCCTCCGGTGGGGAGTCCGAGCCAGATCAGGCGGAATTGTAGGGTTGTTAACTCCG CTTCCACTGATTTTATGGATGATTCAATTATCACTACTCCAACGGGCATAGTTGATACAGATGGGTTCGCGAGTGATATGTGA
AA sequence Show only first row Show all	>Lus10027989 pacid=23181253 polypeptide=Lus10027989 locus=Lus10027989.g ID=Lus10027989.BGIv1.0 annot-version=v1.0 MAVVSMSSLVASSLVAIMLLFAGASYAQQLTPAFYNPTCPNLATIVRQVLQNAAMTDPRIGASMIRLHFHDCFVNGCDGSILLDNSATIVSEKQAAPNNN SVRGFEVIDQMKTQVEAACPGIVSCADILTIASKESVVLAGGPSWAVPLGRRDSLTANRTLANSALPPPFFTVPQLKAAFNAVGLNTTTDLVALSGAHTF GRAACGGFVGRLYNFNNTGGSDPTLNATFLQTLRQLCPQNGNASVLANLDKTTANTFDSAYFRNLQTREGLLQSDQELFSTPGSDTIAIVNRFATNQTAF FQSFVNSMIRMGNIRPPVGSPSQIRRNCRVVNSASTDFMDDSIITTPTGIVDTDGFASDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	0	1
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10004391 [exp]	6.6	0.7207
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035901 [exp]	8.3	0.7685
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	9.6	0.8360
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009669 [exp]	11.5	0.7724
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	21.4	0.7262
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	21.5	0.7452
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	27.4	0.7512
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	28.5	0.6843
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	32.7	0.7632
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	43.6	0.6987

Compare expression of checked genes

Lus10027989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.