Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02940 506 / 3e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 347 / 4e-114 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 214 / 1e-61 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G36090 132 / 3e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT2G17970 131 / 7e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G48980 107 / 3e-25 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008166 [exp] 921 / 0 AT4G02940 511 / 2e-177 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 665 / 0 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 654 / 0 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10041917 [exp] 115 / 4e-27 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028462 [exp] 114 / 1e-26 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 84 / 7e-18 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137700 [exp] 581 / 0 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.008G138900 [exp] 163 / 8e-43 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.010G102100 [exp] 162 / 1e-42 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.002G210732 [exp] 121 / 7e-32 AT4G02940 123 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.005G114800 [exp] 122 / 2e-29 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 116 / 2e-27 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10027990 pacid=23181228 polypeptide=Lus10027990 locus=Lus10027990.g ID=Lus10027990.BGIv1.0 annot-version=v1.0 ATGCCGATGGCGGCGGCAGTGCAAAGGTCTCCGACGAATACCGGAGATCGAGCTGTGGTACCGGTCGTCCAGGCGGCGGGGGCAGCGCCGGTGATGATGA CGACGACGGCGGATGCTTCATCCGCCATCGCCAAGGACGCGATCCTGTCCTGGTTCAGGGGAGAATTCGCCGCCGCGAACGCGATTATCGATGCATTGTG CGGACACCTGGCGCAGGTAGGCGGCGGCGGAGGTGCTGGATCGGACTACGAGGCGGTTTTCTCCGCCATCCACAGGAGGAGGCTCAATTGGATCCCCGTG CTCCAGATGCAGAAGTACCACTCCATTGCTGACGTGGCGGTGGAGCTGAGGCGAGTGTCCGAGCGGAAATCGCCGGAGAAGACGGCTGATAGTAAGTTGA ATGATAATCACAAGGAAACAGAGGAGGTTGTCGTGAATGTGAAAGATGATTGTAAGGAAGCGGTGGAGAGTCAATTGGAGAATGGAGACGGCGGGGTGGA GGTGGAGGTGGAGGGGTCGTCGCCGGCGGCGGAAACTACGGTGGAGGGTGGCGAAAGTGACGGTACTGAATCAGGGGAAGGATGTGAGCACAAAGAGGAG CCCAACAATAATAATAAGATTACTAGTATGATTGATATATGCACCAACCATCAAGATTGCGATGCTCGTCCTACTCACATCAAGTTGACTAAAGGCTTCT CCGCCAAGGAACATGTCAAAGGCCACATGGCGAGGATGTTTAATTTGTTGCAGGTGAATGTTGTGAAAGGGCTGAAACTGTTTGAAGATGTGCTCACTGT CTCAGAGCTCTCCAAGCTGACCCGTTTCGTCAACCAACTCCGTCTTTCTGGACAGAATGGCCAACTTACAGGTGATACGTTCATCCTGTTCAACAAGCAG ATGAAGGGGAACAAGAGGGAGCTGATTCAGTTTGGTGTTCCGATTTTCGAGCACATCAAAGAAGATGCTAGCAACCAAACCTGCAATATTGAACCAATCC CAGCTCTTCTTGAAGGGGTGATCAATCACCTTGTCCAGTGGCATCTGATCCCTGAATATCGAAGGCCGAATGGTTGCATCATCCATTTCTTTGACGAGGA TGAATTCTCGCAACCATTCCAGAAGCCACCTCATGTAGACCAACCAGTAGCCACCCTTCTCCTCTCTGAATCAACCATGGCATTTGGGCGCACTCTTGCT GGTGACAGCGACGGGAACTACAGAGGTCCTCTGGTTCTTTCACTGAAAGAAGGGTCACTTCTGGTAATGAGAGGCAACAGCGCTGACATGGCAAGGCACG TAATGTGTCCTTCCTCAAACAAAAGGATCAGCATCACCTTCTTCAGAGTCCGCGAGCTGCCACCCATCCAAACCCACTCGCCACCGACGAGTCCAATGAG CACCGGTGCACTTACAGTCTGGCAGCCAACAACAAGCCTTCCATACAACAACGGATACGAAACCATGGACACAATACCGCAGTGGGGTACAGTGGTTCAC GCCCCCGTGGTGATGCTAGCACCCATGGCTCGCCCCGTTATGGTAACCTCGAAACGAATGATGCCACAGGGCGGAACAGGAGTCTTCCTCCCATGGGCTG CTGCTGCTGCTGCTGGTAATACAAGGAAACCTACAAAGCAACTTCCGCCACGAGCACAAAGGGCCGGGCGTTACTTGGCATTGCCTTCCGCGGCGGTCGA GACCCGCCACGTGGCAGATTCGTCCAACGAGACGGCCATCAGCGTCGGAGGAGTATCCCCATGA
AA sequence Show only first row Show all	>Lus10027990 pacid=23181228 polypeptide=Lus10027990 locus=Lus10027990.g ID=Lus10027990.BGIv1.0 annot-version=v1.0 MPMAAAVQRSPTNTGDRAVVPVVQAAGAAPVMMTTTADASSAIAKDAILSWFRGEFAAANAIIDALCGHLAQVGGGGGAGSDYEAVFSAIHRRRLNWIPV LQMQKYHSIADVAVELRRVSERKSPEKTADSKLNDNHKETEEVVVNVKDDCKEAVESQLENGDGGVEVEVEGSSPAAETTVEGGESDGTESGEGCEHKEE PNNNNKITSMIDICTNHQDCDARPTHIKLTKGFSAKEHVKGHMARMFNLLQVNVVKGLKLFEDVLTVSELSKLTRFVNQLRLSGQNGQLTGDTFILFNKQ MKGNKRELIQFGVPIFEHIKEDASNQTCNIEPIPALLEGVINHLVQWHLIPEYRRPNGCIIHFFDEDEFSQPFQKPPHVDQPVATLLLSESTMAFGRTLA GDSDGNYRGPLVLSLKEGSLLVMRGNSADMARHVMCPSSNKRISITFFRVRELPPIQTHSPPTSPMSTGALTVWQPTTSLPYNNGYETMDTIPQWGTVVH APVVMLAPMARPVMVTSKRMMPQGGTGVFLPWAAAAAAGNTRKPTKQLPPRAQRAGRYLALPSAAVETRHVADSSNETAISVGGVSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10027990 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	7.6	0.7580
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	10.7	0.7024
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	11.4	0.6957
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	11.4	0.6757
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	15.7	0.6890
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	19.6	0.6908
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	22.8	0.7234
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	24.2	0.6665
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	26.3	0.6886
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	28.3	0.6890

Compare expression of checked genes

Lus10027990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.