Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43990 79 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008165 [exp] 386 / 5e-131 AT2G43990 74 / 3e-14 unknown protein Lus10008351 [exp] 167 / 5e-45 AT2G43990 93 / 1e-19 unknown protein Lus10027108 [exp] 140 / 1e-36 AT2G43990 95 / 8e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145400 [exp] 91 / 5e-19 AT2G43990 252 / 3e-74 unknown protein Potri.017G002200 [exp] 89 / 2e-18 AT2G43990 246 / 3e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027992 pacid=23181184 polypeptide=Lus10027992 locus=Lus10027992.g ID=Lus10027992.BGIv1.0 annot-version=v1.0 ATGAAGCAGTCATTGTTCCGATCAACTTCCGGCCAGCGGGGAGAAAAGAAACAAACTTTCTTAAACCCGACCAAGTCGAAGCAGAAACAGAGGAAGCAAA CACAGGAGGAGGAGGAGGAGGAAATCCGCAGTCCATTTCAAGATCTCAGCAAATGCTGCCCTCGAGGATGTCTCAGGTTCTATCTCAATCACTCTGCAAA ACCCACTTCCAATGATCGTAGTAGTAGCAGGCGGAAGAACAATAATAACAATCAGAAGCACATACCACCTTTCGTAAAGCTCAACAAGCCCATTTCCTCT GCTAAAACCCCTAATAAGTCGAACCCAACTGCTGCCAAACCCAGTTCTAGGGTTTCCCCGTTGAGATCAGTGGGTACTCATGATGTAAGTAGCCTGAAGT CTGATTCGAATCGTGCTCGGTCTAATCCGAATTCGACTCCTTTAATAACAACTGGAGGTGTGTCATCTAGTTTGAATGTTGCAGTCGTTGAAGGGAAAGG CAAGAATGGCAGTAATATAAGTAGGCTAAAGTCTGGATCTGGAGATGTGGGGGAGTTTGATAGTAATCGAAAAGCTCGGTCTGATTTGAATTCCACTCCT TTAAGAACTCGTACTGGAGATGTGTGGTCTGGTTTGAATGTTACAGCCATTGGGGATGAAGGGAAATGTAAAGATAGTAGCAGTAGCTTGAAGAGTGGTA ATTCAGAGAGTAGCAGCATTGACACGAAAACTCCTCCGCTTCATAGCACAGTATCTCCTGAGGAGATACAACAACAGTGTCCATCTTCTTCAAAGAGTGT AACCACTACACCTGTTTGCTATGGTGCTGGCCATCTTTTGTCTGGAACCCCAGACAAGAAGAAGTGTAGGCCTAGGGGCTTACTTGTTGTTGGGGAAGAT ATAGTTGTCGATACGTTTGACATTGATGATCATTATTCTGGTGATCTTTCACCATCTGCATTCCCTGTCAAGGCTTCAATGCATTGGCTTCATTCACCTG GTAAAGAGGACGCTGAGGGTAGTAGCTCTTGGAACGGTGCACAATATCGTTGTGGGTTGGTGCGCCGTGCTATAAACAAAGATTGTCCTCCTCCTTTGCC CTCTTCTAGCTGCAGCTACAATGCATCATCGGATATGTCAGACGAGAACACCAGGAGAATGTGTTATCCATATCCTTCACAAAGCAAGCAAACCCTCACT GGCTCCCAAATGGAAAGCATCAGCAAGAAAAACGGGTGCCCTCTGAATCACATTTGTCAAAAGCTCTGCAAGAAGGCAGTAGTTGCTGGTCCTACTGCTA CCTCGGCTCGAATCGGCCCCACCCCCATCGCCACTAACAATGACAACACTCGCCTTCCCCCTACTACCCCGATTGTGGTGGCTGCGGTCCAGTCAAGGAC TGCAGGCACCACAACAGGAGTGGTAATTGCTAAAAAACCACACCCGTTAGAGGAAAAGAACAATCGAGTTGTGTCGTTCAAACCGGAGGAGACGACGATG ATGGTGAAGTCGTCTGGGTCCATGTGGAGGAGAAGTTTGGGGACTACATTGGGAGGGTGA
AA sequence Show only first row Show all	>Lus10027992 pacid=23181184 polypeptide=Lus10027992 locus=Lus10027992.g ID=Lus10027992.BGIv1.0 annot-version=v1.0 MKQSLFRSTSGQRGEKKQTFLNPTKSKQKQRKQTQEEEEEEIRSPFQDLSKCCPRGCLRFYLNHSAKPTSNDRSSSRRKNNNNNQKHIPPFVKLNKPISS AKTPNKSNPTAAKPSSRVSPLRSVGTHDVSSLKSDSNRARSNPNSTPLITTGGVSSSLNVAVVEGKGKNGSNISRLKSGSGDVGEFDSNRKARSDLNSTP LRTRTGDVWSGLNVTAIGDEGKCKDSSSSLKSGNSESSSIDTKTPPLHSTVSPEEIQQQCPSSSKSVTTTPVCYGAGHLLSGTPDKKKCRPRGLLVVGED IVVDTFDIDDHYSGDLSPSAFPVKASMHWLHSPGKEDAEGSSSWNGAQYRCGLVRRAINKDCPPPLPSSSCSYNASSDMSDENTRRMCYPYPSQSKQTLT GSQMESISKKNGCPLNHICQKLCKKAVVAGPTATSARIGPTPIATNNDNTRLPPTTPIVVAAVQSRTAGTTTGVVIAKKPHPLEEKNNRVVSFKPEETTM MVKSSGSMWRRSLGTTLGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43990			unknown protein		Lus10027992 [exp]	0	1
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	10.3	0.7778
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	23.1	0.7743
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	31.4	0.7518
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	41.0	0.7194
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	41.0	0.7028
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	42.7	0.7484
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	49.7	0.7260
AT1G09320			agenet domain-containing prote...		Lus10010903 [exp]	55.2	0.7291
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	67.3	0.7239
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	72.4	0.6898

Compare expression of checked genes

Lus10027992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.