Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20050 232 / 2e-77 HYD1 HYDRA1, C-8,7 sterol isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015386 [exp] 384 / 2e-137 AT1G20050 261 / 1e-88 HYDRA1, C-8,7 sterol isomerase (.1) Lus10032965 [exp] 380 / 1e-135 AT1G20050 261 / 5e-89 HYDRA1, C-8,7 sterol isomerase (.1) Lus10008164 [exp] 204 / 9e-68 AT1G20050 164 / 4e-52 HYDRA1, C-8,7 sterol isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160500 [exp] 310 / 4e-108 AT1G20050 269 / 4e-92 HYDRA1, C-8,7 sterol isomerase (.1) Potri.001G070301 [exp] 142 / 1e-43 AT1G20050 115 / 1e-33 HYDRA1, C-8,7 sterol isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05241 [flax] [poplar] EBP EXPERA (EXPanded EBP superfamily)
Representative CDS sequence Show only first row Show all	>Lus10027993 pacid=23181121 polypeptide=Lus10027993 locus=Lus10027993.g ID=Lus10027993.BGIv1.0 annot-version=v1.0 ATGGAAGAACCAGGTCATCCGCACCCCTATGTACCGAGGGATTTGAAACTCCCGGGTTTCGTCCCTCCATTTCTGTCTCAGTCCGCTATCCTCGGAATCT TCGGCGCCGTCTCTCTTCTCGTCGTCTCAATCGTCTGGCTTTTCTCTGGCATCTCCCGCAAGAAAATTGGTAAACTTGACAGACTGCTAATGTGCTGGTG GGCTTTCACTGGTCTCACCCACTTGATTCTCGAAGGCTATTTCGCATTTGCACCCGAGTTTTACAAGGACAAATCTGGCTTCTTTCTTGCTGAAGTCTGG AAAGAATACAGCAAGGGTGATTCAAGATATGCAGCAAGAGATTCTGGTGTAGTCTCTGTGGAAGGATTGACTGCAGTCTTGGAAGGTCCAGCGTGCCTTT TAGCCGTATATGGTATTGCTGCGGGGAAGTCCTACAGCTACATACTGCAGTTTGCTATTTCTTTAGGCCAGCTATATGGAACTGCAGTCTATTTCATTAC CGCTTATCTCGAAGGCGATAACTTTGCTGCCACTCCCTTTTACTACTATGCCTACTACATTGGTGCAAATGCTTCCTGGGTTGTCGTACCTTCGCTCATC GCCTTGCGCTGTTGGAGGAAGACTTGTCAAGCCTTTAGCGTCCAAGCATCATCCAGAAAGACCAAAACTCGCTGA
AA sequence Show only first row Show all	>Lus10027993 pacid=23181121 polypeptide=Lus10027993 locus=Lus10027993.g ID=Lus10027993.BGIv1.0 annot-version=v1.0 MEEPGHPHPYVPRDLKLPGFVPPFLSQSAILGIFGAVSLLVVSIVWLFSGISRKKIGKLDRLLMCWWAFTGLTHLILEGYFAFAPEFYKDKSGFFLAEVW KEYSKGDSRYAARDSGVVSVEGLTAVLEGPACLLAVYGIAAGKSYSYILQFAISLGQLYGTAVYFITAYLEGDNFAATPFYYYAYYIGANASWVVVPSLI ALRCWRKTCQAFSVQASSRKTKTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10027993 [exp]	0	1
AT3G19670		ATPRP40B	pre-mRNA-processing protein 40...		Lus10006142 [exp]	1.0	0.8487
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	2.0	0.8287
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10040022 [exp]	15.4	0.8195
AT1G04230			Protein of unknown function (D...		Lus10039411 [exp]	19.8	0.8015
AT5G64680			unknown protein		Lus10018951 [exp]	23.7	0.8132
AT1G15320			unknown protein		Lus10025746 [exp]	25.1	0.7728
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	34.6	0.8173
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	41.2	0.8112
AT1G02330			unknown protein		Lus10026267 [exp]	49.0	0.7780
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	50.1	0.8024

Compare expression of checked genes

Lus10027993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.