Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63900 479 / 4e-171 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT1G59560 310 / 1e-104 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008163 [exp] 620 / 0 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10003391 [exp] 133 / 2e-37 AT1G63900 124 / 1e-34 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138000 [exp] 556 / 0 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12483 [flax] [poplar] GIDE E3 Ubiquitin ligase
Representative CDS sequence Show only first row Show all	>Lus10027994 pacid=23181209 polypeptide=Lus10027994 locus=Lus10027994.g ID=Lus10027994.BGIv1.0 annot-version=v1.0 ATGATGGTTCCATGGGGAGGAATTGGCTGCTGCTTAAGTGCAGCCGCCCTCTATTTGCTTGGGAGAAGCAGTGGCAGGGATGCTGAAGCTCTTAAGTCCG TCACAAGAGTCAATCAGCTCAAGGAATTGGCGAAACTATTTGACGTTGAGAACAATCTCCTGCCTCTGGTTGTGGCAATTTCGGGTAGAGTTGGATCCGA GACACCGATAAACTGTGAGTTCAGCGGTCTGAGAGGTGTTATAGTGGAGGAGACGGCGGAGCAGCATTTTCTTAAGCATAATGATGCTGGGTCTTGGATT CAAGATTCGGCGTTGATGCTATCGATGAGTAAAGAGGTGCCATGGTACTTGGATGATGGAACTGATCGTGCTTTCGTTCTCGGGGCCCGGGGTGCCTCTG GCTTTGTGTTGACTGTGGCAAGTGAAGTCTTTGAAGAATCTGGGCGGTCGCTGGTACGTGGAACACTTGATTATCTTCAGGGCTTGAAGATGCTTGGAGT GAAGCGGATTGAGAGGGTACTTCCAACTGGAACATCATTAACTGTAGTTGGCGAGGCTGTCAAAGATGATATTGGGAAAGTTCGGATTCAGCGTCCACAT AAGGGGCCCTTTTATGTATCTCCTAAAAATATTGATGAACTCATTGGCAATCTGGGGAAGTGGGCAAGGTTATATAAGTATGCCTCGGCTGGATTGACAG TGTTTGGTGCTTTTCTGATTGCTAAGCAAGCCGTAGAGTACATCATGGAGAGAAGGCGACGATGGGATCTACACAGAAAGGTTCTTGCTGCTGCTGCTGC AAAAAGATCAGGCAATCAAGACACTGAAAGTTTGAATGCAACGGCTGAGGATGACTCCGATGGTTCAAAGAGAGACCGTGTTCCGGATATATGTGTAATA TGTCTCGAGAATGAGTACAACGCCGTGTTCCTACCGTGTGGGCATATGTGCTGTTGTACAACTTGCTGTTCGCATCTAAGCAGCTGTCCACTTTGCCGGA GACGGATAGAACAGGTGGTCAAGACTTATCGGCATTGA
AA sequence Show only first row Show all	>Lus10027994 pacid=23181209 polypeptide=Lus10027994 locus=Lus10027994.g ID=Lus10027994.BGIv1.0 annot-version=v1.0 MMVPWGGIGCCLSAAALYLLGRSSGRDAEALKSVTRVNQLKELAKLFDVENNLLPLVVAISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWI QDSALMLSMSKEVPWYLDDGTDRAFVLGARGASGFVLTVASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAVKDDIGKVRIQRPH KGPFYVSPKNIDELIGNLGKWARLYKYASAGLTVFGAFLIAKQAVEYIMERRRRWDLHRKVLAAAAAKRSGNQDTESLNATAEDDSDGSKRDRVPDICVI CLENEYNAVFLPCGHMCCCTTCCSHLSSCPLCRRRIEQVVKTYRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	0	1
AT1G73350			unknown protein		Lus10031897 [exp]	2.0	0.9194
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	3.9	0.9059
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	5.9	0.9051
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	5.9	0.8977
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	7.9	0.9119
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	9.5	0.9040
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	10.0	0.9056
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	10.2	0.8964
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	10.2	0.8778
AT3G25570			Adenosylmethionine decarboxyla...		Lus10019146 [exp]	11.3	0.8683

Compare expression of checked genes

Lus10027994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.