Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02930 761 / 0 GTP binding Elongation factor Tu family protein (.1) AT4G20360 508 / 6e-178 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT5G60390 156 / 3e-42 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 156 / 3e-42 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 156 / 3e-42 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 156 / 3e-42 GTP binding Elongation factor Tu family protein (.1) AT5G10630 120 / 5e-29 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G18070 117 / 5e-28 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT2G31060 88 / 4e-18 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT4G18330 86 / 6e-18 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008161 [exp] 884 / 0 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10043342 [exp] 501 / 3e-175 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 475 / 8e-165 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 481 / 3e-160 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 448 / 6e-156 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10019918 [exp] 159 / 3e-43 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 156 / 3e-42 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 156 / 3e-42 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 144 / 3e-38 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215900 [exp] 775 / 0 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 758 / 0 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.001G110200 [exp] 506 / 3e-177 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.003G121600 [exp] 503 / 5e-176 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.008G043100 [exp] 161 / 4e-44 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 161 / 4e-44 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 161 / 5e-44 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 160 / 7e-44 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 159 / 2e-43 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 157 / 8e-43 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10027995 pacid=23181176 polypeptide=Lus10027995 locus=Lus10027995.g ID=Lus10027995.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTCGTCCTCCGAAACCCTAATTCCAAGCGCCTCTTAACATCTTCTTCTCCAATCTACTGGGGTTGCCGAGGCGGATCAGCCATTACTCATC ATTCTTCTATCCATGGAAATGACTCAACATCGCCTTCTGTTGCTTCGTGGTGGAGATCCATGGCCACTTTCACAAGGACTAAGCCTCACGTCAATGTTGG AACAATTGGCCACGTTGATCATGGAAAGACTACTCTCACTGCGGCAATTACCAGGGTACTGGCTGAAGAAGGTAAAGCTAAAGCTGTTGCCTTTGACGAA ATTGATAAGGCCCCAGAAGAGAAAAAGAGAGGAATAACTATTGCCACTGCCCATGTGGAGTATGAAACTGCAAAGCGTCATTATGCACATGTTGACTGTC CTGGACACGCAGATTACGTTAAAAACATGATTACGGGAGCTGCCCAAATGGATGGTGGGATTTTGGTTGTATCAGCTCCTGATGGTCCTATGCCGCAAAC AAAGGAACACATTTTGCTTGCTCGCCAGGTTGGTGTCCCATCGCTGGTTTGCTTTCTGAATAAATGTGATGCCGTTGATGACCCTGAACTATTAGAGCTT GTTGAGATGGAACTCCGTGAGCTTCTGAGTTTCTATAAGTTTCCTGGAGATGATATCCCTATCATTAGGGGTTCAGCACTTTCTGCTTTACAAGGGACTA ATGAAGAACTTGGTAAACAAGCCATTTTAAAGTTGATGGATGCCGTGGATGAGTATATCCCTGATCCAGTGCGACAACTTGAAAAGCCATTCCTCATGCC TATCGAAGATGTTTTTTCCATTCAGGGTCGTGGAACTGTTGCAACTGGCCGTATTGAACAAGGGACAATCAAAGTGGGAGAAGAAGTTGAAATCTTGGGA CTTACATCGGGTGGTCCCCAGAAAACAACAGTTACTGGCGTTGAGATGTTCAAGAAAATTTTGGACAATGGACAAGCTGGTGACAATGTCGGTCTCCTTC TGCGTGGTTTGAAACGTGAAGATATAGAACGAGGACAGGTGATTGCCAAGCCCGGATCTTTGAAAACATACAAGAAATTCGAGGCTGAGATATACGTCCT GACGAAGGATGAGGGTGGTCGCCATACTGCCTTCTTCTCTAACTACAGGCCCCAGTTCTACATGAGAACTGCAGATATTACCGGTAAGGTGGAATTACCA GAATCCGTGAAGATGGTCATGCCCGGCGACAATGTGACTGCCAATTTCGAGCTGATCCAACCGGTTCCTATGGAAGCAGGACAAAGATTTGCTTTGAGGG AGGGAGGTAGGACAGTTGGAGCAGGTGTTGTCTCGAAAATAAAAAGCAGGTTAGAAGAACTTAGTGGTTGGGAGCAGGAATTGCTATGTTTGAATGGAGA CTGCAAGGTGTTCCTGTTTTATTCAGCATTGACATCTGAACTGAGAGATTTCGGGATCTTAGTGGGAAGTAACTGTTTCTTCCTTTAG
AA sequence Show only first row Show all	>Lus10027995 pacid=23181176 polypeptide=Lus10027995 locus=Lus10027995.g ID=Lus10027995.BGIv1.0 annot-version=v1.0 MASVVLRNPNSKRLLTSSSPIYWGCRGGSAITHHSSIHGNDSTSPSVASWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLAEEGKAKAVAFDE IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKCDAVDDPELLEL VEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEELGKQAILKLMDAVDEYIPDPVRQLEKPFLMPIEDVFSIQGRGTVATGRIEQGTIKVGEEVEILG LTSGGPQKTTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIERGQVIAKPGSLKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELP ESVKMVMPGDNVTANFELIQPVPMEAGQRFALREGGRTVGAGVVSKIKSRLEELSGWEQELLCLNGDCKVFLFYSALTSELRDFGILVGSNCFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	0	1
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	1.0	0.9797
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	2.0	0.9707
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	3.5	0.9625
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	3.5	0.9682
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	3.9	0.9705
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	4.9	0.9673
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	5.5	0.9591
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	5.6	0.9515
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	5.9	0.9648
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	7.3	0.9636

Compare expression of checked genes

Lus10027995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.