Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02920 215 / 8e-66 unknown protein AT1G03340 136 / 2e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008158 [exp] 665 / 0 AT4G02920 248 / 1e-78 unknown protein Lus10008160 [exp] 550 / 0 AT4G02920 209 / 3e-64 unknown protein Lus10029640 [exp] 350 / 2e-118 AT4G02920 250 / 3e-79 unknown protein Lus10042685 [exp] 327 / 1e-109 AT4G02920 233 / 7e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138200 [exp] 340 / 2e-114 AT4G02920 276 / 4e-89 unknown protein Potri.002G215800 [exp] 324 / 5e-108 AT4G02920 290 / 2e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027996 pacid=23181218 polypeptide=Lus10027996 locus=Lus10027996.g ID=Lus10027996.BGIv1.0 annot-version=v1.0 ATGGTTAAGCTTTGTTTGATGACTTCTCATGGCTGCCTTCCTGGTTCTGAGCTCTTGTTTCAGCAAGAACACCACAGGGTTTTCAAGGATTGTCAACCTT ATCTACCTAACATGGTGGCTGGACAAGAGATAACGAGACCAGTCTCCCTTCGTCTGAAGCCGAACGGAATCGAACTCGACAACAACCACTTCCCTACTGT TGGAGAGCCTGTACTTATCAACGTAACAGATGAGTGGACAAAGAGAGTTCTCTCCGGCTCTGGGATTTCTGGACAATGCACCAGAAATGATGGAATAATG CAATTCCCCAAATCTCGCCTGAATGAATTAGAACCATTGGGATTGGATTTGTCCGAGGTTTCTGAGCTGATCGACCTTCAATCATTGCAACTGTCAGTCG ATCTGGGACCACATATTATCAACACAAAGGAAAATTTTGATTCCGTCAACCCTTTAGTAGACTTTCTGGGGGATATGGCTCGCAGTTCGAAAATTACCAT TCAACCGGATGGTCGAGTACTGCTGACCGGCAGTGGCACAGAGATTAAGAACATCATCCCCATTGTTGCTGAGTTTTACCTGGCCAATAGTTCAACCTCG AGGAGAAAACAATCGGCACTCATCCCCCAATATAACCGGTACGAGTACAACACCGAGCTTTCTTCATCCAAGGTCCAAAGTGTCGATAGCAGCACTCAAA AGGCCAAGGGGAAGCCATCCCTTAAAAGGAGAAGCAGCAAGAGAAGGAGTACTAAAGAGCGGGATCTCTACACAAGAAACTACTCCCACGCTTGCGAGAG CCTTCTTTCGCTAATGATGAACAAGAGACATAGTGGGAAAACGGCGATCCTGTCACTCAAAAAGTCTGGCCCCGAGCTACGCGAGTTGCTGACACAGTTC TCTGCTGGCATCGCTGGCACCGGCATTGCAGTACTGTTCTCAGTTATGTGCAAGTTAGCTTGTGGTCCGGTGGTACCCTTATGCACATCGAAAGTGCTAA GCACAGGGTTGGGTTTTGGACTGGTGTGGCTCTCGTGGGCCGTAAACAAACTGCGTGACACGATAATTCGCGTCAGCAGTAATGCTGGCAAGGGCCTCAA GGACGAGGAGGTCGTAACCACTGTGAACAGAAGCTTGAAAGATGTTTACTTCAGAGCTGCAACTTTGCTCGCAGTGGCTGTTTTGAGAGTGGCATGA
AA sequence Show only first row Show all	>Lus10027996 pacid=23181218 polypeptide=Lus10027996 locus=Lus10027996.g ID=Lus10027996.BGIv1.0 annot-version=v1.0 MVKLCLMTSHGCLPGSELLFQQEHHRVFKDCQPYLPNMVAGQEITRPVSLRLKPNGIELDNNHFPTVGEPVLINVTDEWTKRVLSGSGISGQCTRNDGIM QFPKSRLNELEPLGLDLSEVSELIDLQSLQLSVDLGPHIINTKENFDSVNPLVDFLGDMARSSKITIQPDGRVLLTGSGTEIKNIIPIVAEFYLANSSTS RRKQSALIPQYNRYEYNTELSSSKVQSVDSSTQKAKGKPSLKRRSSKRRSTKERDLYTRNYSHACESLLSLMMNKRHSGKTAILSLKKSGPELRELLTQF SAGIAGTGIAVLFSVMCKLACGPVVPLCTSKVLSTGLGFGLVWLSWAVNKLRDTIIRVSSNAGKGLKDEEVVTTVNRSLKDVYFRAATLLAVAVLRVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02920			unknown protein		Lus10027996 [exp]	0	1
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	4.0	0.8464
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	4.5	0.8372
AT3G15760			unknown protein		Lus10043269 [exp]	4.5	0.8379
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	5.7	0.8343
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	6.3	0.8433
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	6.6	0.8288
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	8.1	0.8249
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	9.6	0.8026
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	9.7	0.7918
AT3G50910			unknown protein		Lus10041772 [exp]	10.4	0.8054

Compare expression of checked genes

Lus10027996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.