Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23600 251 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 242 / 6e-81 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 79 / 6e-17 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000665 [exp] 293 / 3e-100 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 293 / 3e-100 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035767 [exp] 245 / 5e-82 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000664 [exp] 212 / 2e-66 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10004436 [exp] 195 / 5e-62 AT3G23570 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10016930 [exp] 42 / 0.0002 AT1G35420 214 / 2e-66 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201400 [exp] 272 / 2e-92 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G112700 [exp] 256 / 3e-86 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G048100 [exp] 98 / 2e-25 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G079000 [exp] 59 / 4e-10 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10027997 pacid=23181245 polypeptide=Lus10027997 locus=Lus10027997.g ID=Lus10027997.BGIv1.0 annot-version=v1.0 ATGACGTCAGCACTAAAAGGGGCGGAGAGAGAAATAGGAGGACTCAAGGCCTATGCCACTGGATCTTCTTCTCAATCCAACCTCTCCCTTCTCCTTGCTT CTGATGTTTTGGGGTATGAAACACCAAATCTAAGGAAAATTGCAGACAAAGTTGCAGCAGCAGGATTCTATGTTGTAGTTCCAGACTTCTTCCATGGAGA TCCGTACATTCCTGACAGACCTGAAATGCCTATCTCCCTCTGGAGGGAATCCCACGGAACAAATAAAGGGTATGAAGATGCTAAACAAGTGATTGCTGCA CTGAGAAGCATTACCGGCATCTCTGCAGTTGGAGCTGCAGGTTTCTGCTGGGGCGGTAGGAGCTTCTTTCCTCGAGTTATTGGGATACAGCCTAAGGTGG TTGTTGAGCTATCTAAAGACTCTGATCTCATTAAAGCTGCAGTCTTGCTACATCCTTCTCGAGTAACTGTCGAGGATATCAAGGATGTGAAGGTGCCGAT TGCAGTACTGGGAGCTGAGATAGACAAGCTTTCACCACCTGAACTTCTCAAGCAGTTTGAGGAAGTTCTGTCTACTAAGCCAGAGGTTGAAGGATATGTG AAGATATTTGGAGGGGTTGCTCATGGATGGACTGTTAGGTACAAAGATGAAGATGAAGCTGCAGTCAAGAGTGCTGAGAAGTCTCATCAGGACATGCTTG ATTGGTTCACCAAATTTGTCAAGTGA
AA sequence Show only first row Show all	>Lus10027997 pacid=23181245 polypeptide=Lus10027997 locus=Lus10027997.g ID=Lus10027997.BGIv1.0 annot-version=v1.0 MTSALKGAEREIGGLKAYATGSSSQSNLSLLLASDVLGYETPNLRKIADKVAAAGFYVVVPDFFHGDPYIPDRPEMPISLWRESHGTNKGYEDAKQVIAA LRSITGISAVGAAGFCWGGRSFFPRVIGIQPKVVVELSKDSDLIKAAVLLHPSRVTVEDIKDVKVPIAVLGAEIDKLSPPELLKQFEEVLSTKPEVEGYV KIFGGVAHGWTVRYKDEDEAAVKSAEKSHQDMLDWFTKFVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10027997 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	5.7	0.8597
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	8.4	0.8628
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	12.6	0.8613
					Lus10024694 [exp]	22.7	0.8482
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	24.5	0.8361
AT5G64420			DNA polymerase V family (.1)		Lus10018176 [exp]	25.8	0.8168
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	28.1	0.8408
AT3G47350		ATHSD2	hydroxysteroid dehydrogenase 2...		Lus10022442 [exp]	35.0	0.8131
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	41.3	0.8219
AT5G58920			unknown protein		Lus10040699 [exp]	41.7	0.8103

Compare expression of checked genes

Lus10027997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.