Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48110 1214 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1) AT3G23590 727 / 0 MED33A, RFR1 REF4-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000663 [exp] 2252 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1733 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10034021 [exp] 1312 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10004434 [exp] 1308 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1239 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10042689 [exp] 391 / 2e-122 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215600 [exp] 1539 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 1504 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.008G201600 [exp] 1303 / 0 AT3G23590 1682 / 0.0 REF4-related 1 (.1) Potri.016G142500 [exp] 754 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027998 pacid=23181195 polypeptide=Lus10027998 locus=Lus10027998.g ID=Lus10027998.BGIv1.0 annot-version=v1.0 ATGGCGGCGGTGTCCGTACAGCCTCTTCCGCAGAGTCTGTGGGACTCGGTCCTCCAACTCACCAAATCAGCACAGGAGAAGAACGCCGACCCGCTCCACT GGGCGATTCAGCTCAGCTCCAGTCTTGCTTCTGCCGGCGTCGCTTTACCTTCCGCCGACATCGCCGACCTCTTAGTCTCTCACATCTGCTTCGAGAATCA TGTACCTATCGCCTGGAAGTTGCTCGAGAAAGCCCTCTCTGTCAAGATCGTCCCTCCCATGCTCGTCCTCGCCCTTCTTTCCACCAGGGTGATTCCGAAT CGACGTTTGCATCCTGCAGCTTACAGGCTTTACATGGAGCTTGTCAGACGACATGCTTTTGCATTTTCGTCTGAAATCAGTGGCCCGAATTCCGCTAAGA TGATGAAATCCATAGACGATGTGCTTCACCTCTCTGATGTGTTTGGACTTGAAGCGACTGAACCAGGGATTTTTCTAGTTCAATTCCTGTTTTCAGTTGT TTGGAAGTTGGTTGATGCTTCATTGGACGATGAAGGGCTGCTGGAACTTACATTAGAGAAGAAATCACGGTGGCTCCAAGCAGCAGAAGATATGGAGATA GATGGCTTTGCTGACAAAAGAAGTGAGCATAATGAAGGGGTGGTGAAAGGAAATACTACAATGGCTATTGAGCTTATTGGGGAGTTCTTGCGGAATAGAT TTACTTCAAGGATTCTTTACCTGGCTTTTGCAAACATGCCTTCGCATTGGGGAAGCTTCTCTCAGGGGATGCAAACACTTCTTGCTAATTCGGTAGCTTT GAGAAGTTCGAAACTTCTCACGCCAGAGGACCTTGAGCAGCTGTTATCCAAAACAACTGTACCTTTCCATCGTTTTTTCAAGACAAAGTTACAGTTAGAG TGCCATGCTAGTATATCTGCTACCTCTATTAAATCCTCTGCCGGTCAATGGCATGGGACGAGCCAGTCCGAACTCTGGCTTCCTATTGATCTCTTTCTCG AAGAATGCATGGATGGCTCGCAATTGGCTGTTGTTAGTGCTATAGAGAACCTTGTAGGGCTGGTTAAATCTTTGCGGGCTATCAATGGCTGTAAATGGCA GGATACCTTTCTGGGACTATGGACTGCAGCTTTACGTCTTGTTCAAAGGGAGAGAGATCCCCGTGAGGGTCCGGATCCTCGTCTTGATACCTGCTTGTGC TTGCTATTGTCTGTTACAACAATTACTGTCGCTGAAATTATTGAGGAGGAAGAGAGTGAACTGGTTGATGTCACTGCATGCTACCCCGGCATTCAAAAGG AAGAGAATCAGGGTCCAGTCACATGCCGTGAAGGTCTAGTTTCCGCTTTACAAATATTGGGCGATTACGAAGGACTGCTGACTCCACCCCAATCTGTCAC TCCCTTAGCAAATCAAGCTGCTGCGAAGGCAACTGTCTTCGTCTCTGGCCTTGCTACTAATAATGGGTATTATGAAAATGTGAGCTTGAATGACATGCCG ATTGATTGTTCTGGTAACCTGAGGCATCTAATTGTTGAAGCTTGCATTGCAAGAAATGTGTTAGACACATCTGCGTACTTATGGCCAGGCTATGTTGGTG CATGCACCAGTCAGGTCCCCAGTCAGATGCCTGGTTGGTCATCGCTGATGAAAGGTTCAGCACTAACGCCTGCAATGATGAGCACTTTGGTTGCAACTCC AGCTTCCTGCTTATCAGAAATCGAGAAAATCTATGAGATTGCGGTCAATGGTTCCAATGACGAGAAGATATCAGCTGCAATCATTCTTTGTGGGGCATCT CTACTTCGTGGTTGGAACGTTCAGGCTCCATTGCTAGCAGGTGCACTGATGCCAATCTGTGAGGTCTTTGGATCAATTGCTCCAGACACCACATGGACTC TCCCAACAGGGGAAGAAGTCTCTTGCCATGCTCTATTCTCATGTGCATTTTCGTTGCTGGTGAGATTGTGGAGATTCCATTTTCCGCCTTCAGATCAAGT AATGGGAGATGTTACATCAGTGGGCTCACAATTAAGCCCTGACTACTTATTGATGGTACGAAATTCTCGGCTAGCAGCCTTTGGAACTTCACCTAGGGAT CAGATTAGACTAAAGAGGTTCTCACAAAAGGTAATTATGTCGAGAGATCCTATATTCATGGACTCTTCCCCGAAACTAAAGATCTGGTACCGGCATCATT TGGAATGCATGTCTTGTGCCTTCTCTGGCCTTGTACCCGGGACTCCTGTTCATCAGATTGTCGAGGCACTGCTCACAATCATGTTCAGAAAGATTAACCG GAATTCCCAGCCGGTGACTGCTACATCTTCAGGAAGTAGTAACTCATCTGGCCCTGCAGCTGAGGAGGCATTAGCTAAACTTAAAGTTCCAGCTTGGGAT ATCTTAGAAGCTACTCCATTTGCCCTTGATGCAGCTCTTACTGCTTGTGGCCATGGAAGGCTTTCTCCCCGTGACCTTGCTACAGGCCTTAAAGATCTTG CTGATTTTCTACCGGCAACTTTGGCCACCATAGCGAGCTACTTTGCCGCGGAAGTTACACGGGGTATTTGGAAGCCTGCTTGTATGAATGGAAGTGATTG GCCAAGCCCTGCTGCCAATCTGGCCTTTGTGGAACAGCAAATAAAGAAGATATTAGCAGCTACCGGAGTTAATGTGCCAAGCCTTACTGTAGCGGGGAGC TCTCCGGCCACACTTCCTTTACCGTTAGCCGCACTTGTAAGCCTCACAATCACTTACAAACTAGACCAAGCATCCGACCGCTTCCTAACTATTGTCGGTC CTGCCTTGACTGCCCTCGGCGCCGGTTGCCCATGGCCGTGCATGCCCATCATAGCCTCTCTATGGGTCCAGAAAGCTAAACGCTGGAGCGACTTCCTCGT TTTCCACGCCTCCCAAACCGTCTTCCACCACAACAGTGACGCTGTAGTTCAACTCTTAAAGAGCTGCTTCGCATGCACACTAGGGCTCACTCCTCTCTAC ATTTCGAGCAGCAGTGGCGTAGGTTGCCTTCTCGGCCACGGTTTCGGGTCCCACTATTCAGGCGGGATAAAACCGGTTGCCCCGGGGATTCTCTACCTGA AAGTTCATCGAGCAATCCGGGACGTCATGTTCATGACCGAAGAAATCGTCTCTCTCCTCATGCACTCGGTTCGAGAAATCGCCGGCAGTGGCTTACCTAG AGACGCCACAGAGAAATTAAGAAAGACCAAGCACGGGATGAGATACGGGCAGCTTTCGATAGCCAAAGCAATGAGACGGGTGAAACTTGCAGCCACGCTC GGGGCTTCATTAGTGTGGATTTCGGGCGGTCTGAATCTGGTTCAGTCCCTGATCAAAGAAACCTTACCGTCATGGTTCATATCGGAACACAGCTCCGACC AGCTATCTAGTGACGAATCCGTCGGCGACTTGGTCGCTACGTTGGGAGGGTATGCTCTGGCGTATTTTGCAGTGCTGTGCGGGACATTTGCATGGGGAGT CGACTCGGCGTCTCTGGCATCTAGACGGCGTTCGAAAGTTTTGACGGCCCACTTGGAGTTTTTGGCGAGTGCCTTGGACGGCAAGGTATCGCTGGGTTGC GACTGGAAGACAGCACAGGCTTACGTAACCGGATTTGTGGGGCTGATGGTGGCTTGCACGCCGAAGTGGGTGGAGGAGGTGAACGTGGATCTGCTGAAGA GGCTGAGTAAGGGATTGAGGCGAGGGAACGATACGGAACTCGCTCTTTCATTGTTGGGGTGTGGCGGAATCGGGTCTATGGGTGCAGCTGCTGAGCTAGT GGTGGAATGTGGATTGTTTAACTAG
AA sequence Show only first row Show all	>Lus10027998 pacid=23181195 polypeptide=Lus10027998 locus=Lus10027998.g ID=Lus10027998.BGIv1.0 annot-version=v1.0 MAAVSVQPLPQSLWDSVLQLTKSAQEKNADPLHWAIQLSSSLASAGVALPSADIADLLVSHICFENHVPIAWKLLEKALSVKIVPPMLVLALLSTRVIPN RRLHPAAYRLYMELVRRHAFAFSSEISGPNSAKMMKSIDDVLHLSDVFGLEATEPGIFLVQFLFSVVWKLVDASLDDEGLLELTLEKKSRWLQAAEDMEI DGFADKRSEHNEGVVKGNTTMAIELIGEFLRNRFTSRILYLAFANMPSHWGSFSQGMQTLLANSVALRSSKLLTPEDLEQLLSKTTVPFHRFFKTKLQLE CHASISATSIKSSAGQWHGTSQSELWLPIDLFLEECMDGSQLAVVSAIENLVGLVKSLRAINGCKWQDTFLGLWTAALRLVQRERDPREGPDPRLDTCLC LLLSVTTITVAEIIEEEESELVDVTACYPGIQKEENQGPVTCREGLVSALQILGDYEGLLTPPQSVTPLANQAAAKATVFVSGLATNNGYYENVSLNDMP IDCSGNLRHLIVEACIARNVLDTSAYLWPGYVGACTSQVPSQMPGWSSLMKGSALTPAMMSTLVATPASCLSEIEKIYEIAVNGSNDEKISAAIILCGAS LLRGWNVQAPLLAGALMPICEVFGSIAPDTTWTLPTGEEVSCHALFSCAFSLLVRLWRFHFPPSDQVMGDVTSVGSQLSPDYLLMVRNSRLAAFGTSPRD QIRLKRFSQKVIMSRDPIFMDSSPKLKIWYRHHLECMSCAFSGLVPGTPVHQIVEALLTIMFRKINRNSQPVTATSSGSSNSSGPAAEEALAKLKVPAWD ILEATPFALDAALTACGHGRLSPRDLATGLKDLADFLPATLATIASYFAAEVTRGIWKPACMNGSDWPSPAANLAFVEQQIKKILAATGVNVPSLTVAGS SPATLPLPLAALVSLTITYKLDQASDRFLTIVGPALTALGAGCPWPCMPIIASLWVQKAKRWSDFLVFHASQTVFHHNSDAVVQLLKSCFACTLGLTPLY ISSSSGVGCLLGHGFGSHYSGGIKPVAPGILYLKVHRAIRDVMFMTEEIVSLLMHSVREIAGSGLPRDATEKLRKTKHGMRYGQLSIAKAMRRVKLAATL GASLVWISGGLNLVQSLIKETLPSWFISEHSSDQLSSDESVGDLVATLGGYALAYFAVLCGTFAWGVDSASLASRRRSKVLTAHLEFLASALDGKVSLGC DWKTAQAYVTGFVGLMVACTPKWVEEVNVDLLKRLSKGLRRGNDTELALSLLGCGGIGSMGAAAELVVECGLFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	7.6	0.9338
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10028679 [exp]	7.7	0.9385
AT2G20320			DENN (AEX-3) domain-containing...		Lus10000499 [exp]	10.2	0.9147
AT1G27752			Ubiquitin system component Cue...		Lus10007753 [exp]	11.8	0.9066
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	15.8	0.8996
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	18.0	0.8910
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	18.1	0.9326
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	22.9	0.9160
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	26.3	0.8731
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	31.5	0.9325

Compare expression of checked genes

Lus10027998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.