Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02900 1048 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 983 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G11960 946 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 944 / 0 ERD (early-responsive to dehydration stress) family protein AT4G04340 935 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G62320 927 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 899 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G32090 788 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 353 / 4e-111 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 327 / 5e-101 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000660 [exp] 1411 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 981 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 977 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 961 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 956 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002996 [exp] 946 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10024477 [exp] 944 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 835 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 346 / 4e-108 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009900 [exp] 980 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 969 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 964 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006100 [exp] 957 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 952 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 926 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 812 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 810 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 360 / 2e-113 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 354 / 3e-111 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10028000 pacid=23181189 polypeptide=Lus10028000 locus=Lus10028000.g ID=Lus10028000.BGIv1.0 annot-version=v1.0 ATGGCTACACTTGAAGATATTTGCTACTCAGCAGTTATCAATCTTCTATCTGCTATTGCTTTCCTTTTAGCATTTGCAATGCTACGGCTTCAGCCTGTAA ACGACAGAGTTTACTTTCCGAAGTGGTACCTTAAGGGGATAAGAGGTAGCCCTACGCACCATGGGGGTTTTATGAAGAAGTTTCTCAATGTGGATCCTAG AACCTACGTACGGTTTTTGAACTGGATGCCTGCAGCTTTGAGAATGCCAGAACCCGAACTCATTGATCACGCCGGACTTGACTCAGTAGTCTATATACGG ATTTACCTTATGGGGTTGAAAATATTTGTTCCTATAACATTACTGTCCTTTGCAGTTTTGGTCCCGGTCAATTGGACTGGGGGGACACTAGAGAAGATTA AAGACTTGACATTCAGTGACATTGACAAGCTGTCAATATCTAACAACCCAGAAAATTCTCCACGGTTCTGGGCACATACAGTGATGGCATATGTCTTCAC ATTCTGGACATTCTATGTGATCTACAATGAGTACAAGGCAGTAGCTAACATGCGGCTGCAGTTTTTGGCTGGGGAAAATCGTCGTGCCGACCACTTCACA GTTCTTGTGAGAAATGTTCCCGCAGATCCAGATGAATCAGTGACAGATCACGTTGAGCACTTCTTCTGTGTAAATCATCCAGAACACTATCTCCTTCACC AGGTAGTGTACAATGCAAACAAGCTTGCAGATGTGGTTGCAGAAAAGAAGAGCATGAAGAATAGGTTAACCTATTATCAGAACAAATTTGAAAGAAATCC ATCTAAAAGGCCAATCACAAAGGCAGGCCTAATGGGTCTGATTGGGGAAAAAGTAGATGCAATTGAGTACTACGAAACCGAGATTGAGAAGTTGACCAAA GAGGAAGAAATGGAAAGAGAGAAGGTTCTGAGTGATGCTAATGCCGTGATACCAGCAGCCTTTGTTTCTTTCAGATCACGATGGGCAGCTGCCGTTTGTG CACAAACTCAGCAATCAAGCAACCCGACAATATGGCTCTCCGAAAGGGCTCCTGAGCCGCGTGATGTCTACTGGAACAACCTTGCAATACCATATGTTGA GCATACTATTCGGAGGTTTCTTATGGCAGTAGCTCTGTTCTTCTTGATTTTCTTCTTCGTCATTCCCATCGCAATCGTGCAGTCCCTGGCCACCATTGAA GGAATTGAGAAGGCTTTTCCTTTCTTGAAGCCTCTTATAGAAGTGGAATCCGTCAAATCCATAGTCCAAGGGTTTCTTCCAGGAATCGCTTTGAAAATAT TTCTCATCATACTTCCAACTATACTAATGTTCATGGCCAAAATCGAAGGATACCACTCGCTTTCATCGTTGGATAGGCGAGCAGCTTCCAAGTATCACTT GTTCCTTCTGATCAACGTCTTCCTTGGCAGTATCATCACAGGAACAGCTCTAGAGCAGCTCAAATCTTTCATGAAACAGTCTGCATCCGAAATCCCGCAG ACAATCGGTGTGTCGATGCCAATGAGAGCGACGTTCTTCATTACGTACATAATGGTCGATGGGTGGTCGGGAATTGCAGCAGAAATTCTGAGATTGGTGC CATTAGTCATATTCCACTTGAAGAACTGGTTCTTGGTAAAGACGGAGCAAGATAGAGAGGAAGCAATGGATCCTGGTAGCATATGCTTCCCCATATCAGA GCCTAGGATACAGCTCTACTTCTTGCTGGGTTTTGTTTATGCTCCAGTCACTCCCATGCTCCTCCCTTTCATCCTTGTCTTCTTCGCCTTCGCCTATGTC ATCTTCCGTCATCAGATCATCAACGTCTACGACCAGAAATACGAGAGTGGAGCTGCGTACTGGCCAGACGTGCATCGACGGTTGATAATCGGATTAGTGA TATCTCAGCTACTACTAATGGGGTTGCTGAGCACAAAGGGAGCTGAGGAACTGACACCTTGTCTCGTAGCTCTCCCTGTTCTTACCTTCTGGTTCCACAA GCTCTGCAAAGGCCGCTTCGAATCTGCATTCGTCAAATTCCCATTACAGGAAGCAGTGGTGAGGGACACGTTGGAGAGAGCTACGGAGCCGAATCTGAAC CTGAGAATGTATCTTCAGGATGCTTACGTCCATCCGATTTTCAAAGACGATCCAGCCGATCACGCCGAGATGGCGATGGAAGAGTACGACGAAGATAACC CGCTTGTTGCTACTAAGAGAAGTAGTAAGTTTGTGTCGGACGTCAGTTCTGGGACTGGTTCCAAATAA
AA sequence Show only first row Show all	>Lus10028000 pacid=23181189 polypeptide=Lus10028000 locus=Lus10028000.g ID=Lus10028000.BGIv1.0 annot-version=v1.0 MATLEDICYSAVINLLSAIAFLLAFAMLRLQPVNDRVYFPKWYLKGIRGSPTHHGGFMKKFLNVDPRTYVRFLNWMPAALRMPEPELIDHAGLDSVVYIR IYLMGLKIFVPITLLSFAVLVPVNWTGGTLEKIKDLTFSDIDKLSISNNPENSPRFWAHTVMAYVFTFWTFYVIYNEYKAVANMRLQFLAGENRRADHFT VLVRNVPADPDESVTDHVEHFFCVNHPEHYLLHQVVYNANKLADVVAEKKSMKNRLTYYQNKFERNPSKRPITKAGLMGLIGEKVDAIEYYETEIEKLTK EEEMEREKVLSDANAVIPAAFVSFRSRWAAAVCAQTQQSSNPTIWLSERAPEPRDVYWNNLAIPYVEHTIRRFLMAVALFFLIFFFVIPIAIVQSLATIE GIEKAFPFLKPLIEVESVKSIVQGFLPGIALKIFLIILPTILMFMAKIEGYHSLSSLDRRAASKYHLFLLINVFLGSIITGTALEQLKSFMKQSASEIPQ TIGVSMPMRATFFITYIMVDGWSGIAAEILRLVPLVIFHLKNWFLVKTEQDREEAMDPGSICFPISEPRIQLYFLLGFVYAPVTPMLLPFILVFFAFAYV IFRHQIINVYDQKYESGAAYWPDVHRRLIIGLVISQLLLMGLLSTKGAEELTPCLVALPVLTFWFHKLCKGRFESAFVKFPLQEAVVRDTLERATEPNLN LRMYLQDAYVHPIFKDDPADHAEMAMEEYDEDNPLVATKRSSKFVSDVSSGTGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02900			ERD (early-responsive to dehyd...		Lus10028000 [exp]	0	1
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	1.7	0.9846
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	2.4	0.9802
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	2.4	0.9707
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	4.5	0.9621
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	5.0	0.9668
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	7.5	0.9690
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	10.7	0.9660
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	12.3	0.9429
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	12.6	0.9530
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	13.3	0.9630

Compare expression of checked genes

Lus10028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.