Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63060 304 / 6e-104 EDL3 EID1-like 3 (.1) AT5G15440 200 / 1e-62 EDL1 EID1-like 1 (.1) AT5G39360 197 / 4e-62 EDL2 EID1-like 2 (.1) AT4G02440 48 / 3e-06 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000659 [exp] 303 / 3e-104 AT3G63060 212 / 1e-68 EID1-like 3 (.1) Lus10029662 [exp] 208 / 2e-66 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10042699 [exp] 205 / 3e-65 AT5G39360 428 / 4e-154 EID1-like 2 (.1) Lus10025639 [exp] 201 / 2e-63 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10018196 [exp] 158 / 6e-47 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10007870 [exp] 56 / 9e-09 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 53 / 9e-08 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125000 [exp] 211 / 2e-67 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 202 / 3e-64 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 53 / 1e-07 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 51 / 4e-07 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028001 pacid=23181250 polypeptide=Lus10028001 locus=Lus10028001.g ID=Lus10028001.BGIv1.0 annot-version=v1.0 ATGATGAACAATAATCAGAACAAGCGAGTTAAGCCACTGAGTCATGCTGCCGGATCTGACTCGTCAGCCTCCAGGATTTTGAACGAGCGGATTCTAGTCC TTGTATTCGAGTCAATAAAGTGGGACCTCCCGACGCTCTGCGCGACGGCGGCGGTGAACAGGAAGCTCCAGGCGGTGGCGAAGCGGCTGCTGTGGCGGGA GCTATGCGTGTACCGCGCTCCGAAGATGCTGTCCGAGCTTTCCAACGGCGGATCTCTCAACGGGGGCGGGAGAATCGACGGAGGATGGCACGCGCTAGCT AAACTGATGTTCTTCTGCTGCGGATGCAGCCACCAGCTCAGCAATGGGAGCTTCAAACCGGTGAACCGCCCGTCGCCCGGACACCTGGCGCAGGCGTCTC GATTCTCGAAGACATCCGGACGGAGCTTCCTGGCGAAGAACTGCAGGGGGGACCTGCTGTACGTGAGCGACCCGTGCGAGCATTCGATGGGGGAGGAGGA GGACGATTTTGGGGTGTACAGAGGGGTATTTCGGGGATTTATGAGGTCGAAGACTCGGGCGTGCCTGATCAGGAGGCAGGCCAGGCTGGAGGAGAAGGTG AGGTGTCCGTACTGCGGCGCCAGGGTTTGGAGCATGACGGCGGCGAGGCTTGTACCGAGGAGCGCGGCGAAGAGGCTCGGCGCCTCTCAGGACGGCGGGG TGGAGTATTTCGTATGCGTCAACGGGCACCTCCACGGGATGTGCTGGCTGGTACCGCTGTCCTCTGATGAAGAGGGAGCTGTATCGGATCTGGAAGACGG AGACGGCGGGGATGACAGTCTGGAAGACGGAGGCGGCGGGGATGACAGCGAACGCGGCGGGGATTGCGACCAGACAGTGGAGAACGGGAGCACTAGATAG
AA sequence Show only first row Show all	>Lus10028001 pacid=23181250 polypeptide=Lus10028001 locus=Lus10028001.g ID=Lus10028001.BGIv1.0 annot-version=v1.0 MMNNNQNKRVKPLSHAAGSDSSASRILNERILVLVFESIKWDLPTLCATAAVNRKLQAVAKRLLWRELCVYRAPKMLSELSNGGSLNGGGRIDGGWHALA KLMFFCCGCSHQLSNGSFKPVNRPSPGHLAQASRFSKTSGRSFLAKNCRGDLLYVSDPCEHSMGEEEDDFGVYRGVFRGFMRSKTRACLIRRQARLEEKV RCPYCGARVWSMTAARLVPRSAAKRLGASQDGGVEYFVCVNGHLHGMCWLVPLSSDEEGAVSDLEDGDGGDDSLEDGGGGDDSERGGDCDQTVENGSTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	0	1
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	4.7	0.8205
AT5G66780			unknown protein		Lus10026022 [exp]	6.2	0.8161
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	6.7	0.8254
AT1G71140			MATE efflux family protein (.1...		Lus10028904 [exp]	9.3	0.7063
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	9.8	0.8015
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	9.8	0.7428
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10032569 [exp]	10.0	0.7252
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	16.4	0.7755
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	17.9	0.7482
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	19.5	0.7575

Compare expression of checked genes

Lus10028001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.