Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48160 248 / 3e-67 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 246 / 9e-67 Tudor/PWWP/MBT domain-containing protein (.1) AT5G23150 149 / 3e-36 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 128 / 1e-29 Tudor/PWWP/MBT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042690 [exp] 672 / 0 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1) Lus10040980 [exp] 162 / 4e-40 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10013433 [exp] 159 / 4e-39 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 137 / 2e-32 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 135 / 9e-32 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138700 [exp] 321 / 4e-91 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.007G071600 [exp] 157 / 1e-38 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.005G092700 [exp] 155 / 7e-38 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028004 pacid=23181131 polypeptide=Lus10028004 locus=Lus10028004.g ID=Lus10028004.BGIv1.0 annot-version=v1.0 ATGGCCTCTGGAAGACTCCAAAGCTCTAGAGATGGGTCACGAAGAACAAAACGTATCAGGAAATCGCCAGTTGCCATGGAGAATGAGGATGTTGATTCAT CTGCTTTTGTTTCAAATGGAAGCATTGAGGATAATGTCTCTGAAATTGTTACAGCTGATTCTGATTCCGTCAGTATAAATGAAATTGGTACTGTAGACAG CTCTTACAAAGTAGAGCACCATGAGGGAGCTACTGAGCGTTTAGGAGAAGAGGTTCAATTGGCTGAAGCTCTTAATTTCCAGATAAAGGCTGTTGTAATT AGGAAGAAGAGGAAACCAAGTAGAAAGCGGGCAAGCAATGAAACGTCTGATCCAACTGGAGGAGCGGATGGTAGGTCGGATTTTGAGGTTGGCGTAAGTA ATACTGACCCGAATTTGCAACTTGTGTCACAAAATGAAAAGAAAACTTGTAGTAAAGAAGATGGTGACGAGCATCTACCACTGGTTAAAAGAGCCAGAGT TAGGATGGGGGAATTACCATCTTTAAGTGAGGAATGTAATACACGTCAGTCTGATGGTCAGACGATGAATGATGGTCCTGTCAGTCAGGGGCTGCAGAAT GGCCCATGTCAGACTGAAGAAAGAACTCCAAGAGAGATGGTGGCTCAGGTTGCTTCATCTTTGAATGATGGTCGTCCAACCAGTAGACATTTAGCAGTTG ATCAGATTCTAGATAATTTGTCACTATCTGAGACCAGCAATGAAATACCTGCTGAGAAGGTGCTGTCTTCAAGTTTGAAGGATAGCCAATCTTTTAGCCA ATCTTTTTGTCATCTACCTGATGAAGAATCTGCATTGCCTCCTAGCAAACGTCTTCATCGTGCCCTTGAGGCCATGTCTGCAAATGTTGCTGAAGAAATA TCAGTCATGAATGATTGTGTTGGTGGTAATGCTCCTAACGACATTGGAAGTATAGATAGAGAAGAGAAATATCCAGATTCTGTCGATGATGGAGTTCCTC TGCTATGTTTGAGCTCCAATCTGGTTTTAGAAGAAGCTGCTATATCCTTACCCAAGGCAGCTAGTTCCAATGAAAAAATTGAGCTATTGATCAGCTGTGA ATCTCATAAAACCAATCTACATGAGAACATGGATAATAGCAATCTGGAAGATTTTGATAGACTGGCTCTTCAATCAAGTACTGTTGATTCAGCTTCTGTT GATGGAGAAACTCGTGTAGATTTGATGCTTGATGCTGAGGGGCATTTTGATGTGTTGGAATCAAATAAAACACCGCAAGAGCAGCAGCTGCCGATTGTGC ATAAAGATGTAGAACCTGAAAGCCATCAGTCTGATATTATGAGAGTGGAAAGTCCCGTTAAATATCTCGGAGTGTGTGAGAAGGATTCAGAGAGGACTGC TGAAAGTACTCACCATATTGTTGAAGCTGCTCAAGGAGATGGGCCAGAAGTGCATGAGGTTATTATGGATGTGATCATGTCTGAGAATGTGGTGTCACGG TGCTCTGAAATTGATGAGAATAATCAAATGGATGGAAGGAACAAAGTGGAAAAAGATGGTGATCAAATTCTGCAGGAAGGTAGTGGCATTAAGTTTTTGG ATGACCATTGTTCTGGCAAGGACACATTGGTTGTTCAGCCACCGACAATGTCAGCTGATGAAGAATCTCCTGCAAGGATGTCCTCGAGCACTATATCCAT GTGTCATGTGTCTACTTCAGAAAGTGCTAACAATCAGAATAGTGGTGGTTCTAGTCCTACTACCAATTCAAACCAGAGGAGATGTGGCACTATACCTGCT GACGAGGAGAAGGTCGACTCTGCAGTACCTGAAAGGCCAAAGTCTATTGGAAGATGTGGTAGTCATGTAGAACAGCAGTCTGCTTTGTCGTCTTTCGAGG GATTGCTTGGATCCTTAACACGGACAAAGGAGTGCATTGCTCGAGCAACTCGCATGGCAATGGATTGTGCAAAGCTTGGTGCCTCTTTGAAGGTGATGGA AATTCTGACTCGGAATTTGGAATGCGAGTCAAGCCTGCACAAAAGAGTGGACATGTTCTTCCTTGTGGATTCCATTGCTCAGTGTTCTCGAGGCTCTAAA GGTGATGTTGGTGCTGCTTGCCTTTCTGCTATACAAACAGTTTTGAAGCTTTGGTTGGAAAGAAGAATTCTCCCTGAACTCATCATCCGACGGCATATTC GAGATCTAGAGTCATTTGGTCCATCAACTTCTGCAGCATACTGTCGCCGGTCAGCGAGAACCGATAGGTCTCTGGATGACCCTATTAGAGATATGGAGGG TATGCATGTCGATGAATATGGAAGCAATTCCAGTTTTCAGCTCCCTGGATTCTGTATGCCTCGAATGCTCAAGGATGAAGACGAAGGAAGCGACTCCGAT GGAGGCAGTTTTGAGGCTGTCACTCCTGAACATCATTGTGATGCCCCTGAAGAACAGAAGTCCATACCTGCTACTATTGGAAAACACACGCATATATTGG AGGATGTAGATGGCGAACTAGAGATGGAGGACGTGGCTCCCTCGTGTGAAATGGAAATGGATTGTGCACAGAGTTCACAAAGCCAATTTGGACAACATTT CTCATCGCACTATGCCCCTCCCTTGCCACAGGAGGTTCCACCATTGTCTCCTCCTTTGCCATCATCTCCACCTCCACCCCCGCCGCCTCCACCACCTCCA GTCCCTCCTGTTATCGGCCATGCAGCATGTGGAGCACGTGATCCATATGGAAATAACCTTGATACAAGGCCTTATAGGAATGCTCATAACTTGCAAGGTG ACCCCAGGATGAACCCTTCAACATCAAATGGAGTGCACTGCTATCCTTCTGAATGTAGAGACCAGACAGACATGCAATTCTATGATTCGTGCAATACCGG GCATGGTTATCGTCAGAAGTCCCATCCACCTAGACCACCACCGCATCTTCTACCTCCAGACCATTTTCCTTACGCAAATGGAAGTCAACATGTCAAATCC AGGAGGGAGACACCACCGAGGTCATACTCGCATAGATACCACTCTTCACATGATGCTGATGGCGGTAACTTTTATAACAACCATGAAAGAAATAGACCGG GACCATATGAGTTTGATGATAACTGGAGATATCCTCCACCTCCTCATTCAGGTCCTCGGTATCATGAAAGATCGAAATCATCATATGCGCCTTTCCCTTA CGAGAGGCCCTCAAGGGAACCAGCTAGATTACCTCATCATGGATGGGATTATCTGCCCAGGGGAATGGATCATCACAGAGAATTCATGCATCATTCTGAA GAACCAGTTTCTGTGTCGAATAGAGGTAATGCCAACAAACTTCGGTAG
AA sequence Show only first row Show all	>Lus10028004 pacid=23181131 polypeptide=Lus10028004 locus=Lus10028004.g ID=Lus10028004.BGIv1.0 annot-version=v1.0 MASGRLQSSRDGSRRTKRIRKSPVAMENEDVDSSAFVSNGSIEDNVSEIVTADSDSVSINEIGTVDSSYKVEHHEGATERLGEEVQLAEALNFQIKAVVI RKKRKPSRKRASNETSDPTGGADGRSDFEVGVSNTDPNLQLVSQNEKKTCSKEDGDEHLPLVKRARVRMGELPSLSEECNTRQSDGQTMNDGPVSQGLQN GPCQTEERTPREMVAQVASSLNDGRPTSRHLAVDQILDNLSLSETSNEIPAEKVLSSSLKDSQSFSQSFCHLPDEESALPPSKRLHRALEAMSANVAEEI SVMNDCVGGNAPNDIGSIDREEKYPDSVDDGVPLLCLSSNLVLEEAAISLPKAASSNEKIELLISCESHKTNLHENMDNSNLEDFDRLALQSSTVDSASV DGETRVDLMLDAEGHFDVLESNKTPQEQQLPIVHKDVEPESHQSDIMRVESPVKYLGVCEKDSERTAESTHHIVEAAQGDGPEVHEVIMDVIMSENVVSR CSEIDENNQMDGRNKVEKDGDQILQEGSGIKFLDDHCSGKDTLVVQPPTMSADEESPARMSSSTISMCHVSTSESANNQNSGGSSPTTNSNQRRCGTIPA DEEKVDSAVPERPKSIGRCGSHVEQQSALSSFEGLLGSLTRTKECIARATRMAMDCAKLGASLKVMEILTRNLECESSLHKRVDMFFLVDSIAQCSRGSK GDVGAACLSAIQTVLKLWLERRILPELIIRRHIRDLESFGPSTSAAYCRRSARTDRSLDDPIRDMEGMHVDEYGSNSSFQLPGFCMPRMLKDEDEGSDSD GGSFEAVTPEHHCDAPEEQKSIPATIGKHTHILEDVDGELEMEDVAPSCEMEMDCAQSSQSQFGQHFSSHYAPPLPQEVPPLSPPLPSSPPPPPPPPPPP VPPVIGHAACGARDPYGNNLDTRPYRNAHNLQGDPRMNPSTSNGVHCYPSECRDQTDMQFYDSCNTGHGYRQKSHPPRPPPHLLPPDHFPYANGSQHVKS RRETPPRSYSHRYHSSHDADGGNFYNNHERNRPGPYEFDDNWRYPPPPHSGPRYHERSKSSYAPFPYERPSREPARLPHHGWDYLPRGMDHHREFMHHSE EPVSVSNRGNANKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	1.7	0.9742
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	3.5	0.9636
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	4.2	0.9610
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	5.1	0.9677
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	5.2	0.9660
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	6.2	0.9530
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033458 [exp]	8.4	0.9254
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	8.4	0.9623
AT1G27430			GYF domain-containing protein ...		Lus10011331 [exp]	8.7	0.9446
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	8.8	0.9410

Compare expression of checked genes

Lus10028004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.