Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02880 219 / 4e-62 unknown protein AT1G03290 219 / 1e-61 unknown protein AT5G64980 66 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012382 [exp] 851 / 0 AT1G03290 172 / 1e-45 unknown protein Lus10028006 [exp] 410 / 3e-134 AT1G03290 262 / 2e-80 unknown protein Lus10012381 [exp] 333 / 1e-104 AT1G03290 238 / 2e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139000 [exp] 251 / 1e-73 AT1G03290 268 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028005 pacid=23181149 polypeptide=Lus10028005 locus=Lus10028005.g ID=Lus10028005.BGIv1.0 annot-version=v1.0 ATGGGGTTCAAATCTGTTTATCAGTCTTTGATAGATGTCTTCCCTCAGGTTGACGTCAGAATTCTGAGGGCTGTAGCTCTTGAGCATTCAAAGGACCCTG ATTTGGCCGTGGAAGCGGTTCTTTCTGAGATACTTCCTGTCCTGGAGAGTAAATCTCAGGTTTCTGAACATGCTCCTCAGAGACCAGAAGAAGAACCTGA ACTGCTGGAGCAAACTGATCTCTTGCGCCGTAGACCAAGTGGTTCAGGGAAGAACTTGGTTGCTTCGTCAGATGCTTCTTCTTCAAGAGCACAATCAGCT GTTTACGATGATCTTAGAAATGATCTTGGAAGTTGGGATCATCATCTTGTTGGTTTGACGATAGATAATCTTAGAGAAGATTTTAAGAGTTGGGATAATC GTTCTGCTGCCCCCAGTTTGTCTAACGGTGCTAAGGCCACTTGGGGCAATGGTATTAGGGTTGATAATGGGAGTCCGAGCCGTCATGTTTCGTCTTCAGG AGTGGATAGTCCTGAAGATCCTCTTACGAGTCGGGGTAAGCGTGTTGGTAACCCCCCTTGGCTCAGAGCTTGTGGAGTTGGTAAGAGGAGTTGGGGTCAT CATGTTCCTGCTGCGATTATAGATGATCTCAGAGAAGATTTTAGGAGTTGGGATCATCCTATTGCTCCCTCCATTTTGGTCAATGCTGCTGGAGGTAATA ATGGGAGTTGGTTTGGTCTTAATGTTGCTGCCCCCAATGTAGATGATCTTAGAAACGATTTCATGAATCGGGATCATCATGTTGCTGCCAACATAGATGG TCTTCGAATTGGGGGCCAGGGTCATCAAGTTGGTTCTTCTAGCAGTAAGAACATGGAGAAGATCATCCCTCTCTCATCTCCAAACTGGCAACAAGCCAAG GTAGATGATAATGAAGGTTGGGGTCCTCACGTTGGTTCTTCTAGCAGCCAGAATTTGGAGACTATCATCTCACCCTCGTCTCCAAACCCGCAACAGGAGG TTAATCAGTTGCAAAAGAGTGTAGATAGTGAAGAACTGATTTTGCTTCATAAGGTTCCTGATCAAGGCGAGAACACCACGTCTGGTTCAATTCAGGCTAC TCGCATTACCGAGGATGATGTGACTTCTCAAATCGGTAAATACAACGATGGTGAAGTTTTCTTTGACTCTGAAAATGAGATACCTTCTCCGGAGAAGTGT GAAGATGCTGACGGCATAGTTGGCTCTGAGCACATCCCTCCTGTTGTGTCTGCATTTGAAGGAGATGCTTCCTCTGGTAGTGTTTTGCCTGAACAAGAGA AGGAAGAAAGAATTTCCCATGCTACTTTGTATGCACTTGATGTGGCTGTTGCTGAGAATGTTGGCGAGAAAGTTGCTGTAGTAAATGCAGAGGTTGATGC GTCCTCTGGTAGTGTTTTGACTGAACAAGAGAGGGAAGAGAGAATTTCCCATCTTACTTTGGATGCGCTTGATGAGAAAGTTGGTGAAGTAAATCCAGAG GTTGATGTTGCTGTCGACTTGAACGTTTCTTCAGTAGAGCAGAGAGTAGCTATGGGTGATTTTAGTTATGAAATTTCAAGCAGCAGTCCAAGTAATGTGA GCATTGAGGTTCTGGAGGAGATCATTGAAGCTGGTAAAGACAACAAGAGAACCTTATTTTCTGCTGTGGAGTCGGTTATGAACAAAATGAGAGAAGTTGA ATTGAAAGAGAAAGAAGCAGAGCAAGCCGAAGTGGAAGCTGCAACAGCAGGTGTGGACATGCACGTCCAGGTAGAAGAACTCAAGAAGATGCTGGGACAT GCAAGGGAGGCTAATGACATGCACGCAGGAGAAGTGTATGGTGAGAAGGCCATACTATCAACTGAAGTGAAGGAGTTGCAAGCTCGTGTAGCCAATCTGT CTGACGAAAGAGACTCTGCTCTAGCAGTTCTAGATGAGATGCATCGAGTGTTGGAAGAACGTTTGGTGGCAGCAGAAGAGCTGCTAAGAGCAGCTGAAAA GGAGAAGTTCGTCAAGGAAGAGTCTGCACGCAAAGCTCTTGCTTATCAACAATTTATGATGGAGAAAGTCGTTCATGAGTCGAAGATCCTGCAAGAGGCA GCAGAAGAAAATTCGAAGTTGCGGGAATTTCTTATGGATCGCGGTCATGTGGTTGATACTCTGCAAGGAGAGATATCCGTCATCTGTCAGGATGTTCTTT TGCTGAAGGAGAAGATCGACAATCGCGTCCCGTTGAGCCAATCCATCTCTTCGAGCCAGACAAGTTGCATCCTGGCTTCTTCAGGTTCGTCCTCTAGAAC TGTTTTGGCAGTGGATGTTGCTCCTGCATTTGGCGATGCATCTCCCGTCTCGAAACATACGAGTCCTGCATCCTCTGTGCATGCCGAATCACCTAGGAGC AAAGATGCCGAAGCTTCCCTGTCATCAACCGAGAATGATGCTTTTGAGGAAAGGATGATACCGAAAGAGCCGGTTCTGGATGATGAATGGGATCTAGTTG ATGTCAATGGTCATATCTGA
AA sequence Show only first row Show all	>Lus10028005 pacid=23181149 polypeptide=Lus10028005 locus=Lus10028005.g ID=Lus10028005.BGIv1.0 annot-version=v1.0 MGFKSVYQSLIDVFPQVDVRILRAVALEHSKDPDLAVEAVLSEILPVLESKSQVSEHAPQRPEEEPELLEQTDLLRRRPSGSGKNLVASSDASSSRAQSA VYDDLRNDLGSWDHHLVGLTIDNLREDFKSWDNRSAAPSLSNGAKATWGNGIRVDNGSPSRHVSSSGVDSPEDPLTSRGKRVGNPPWLRACGVGKRSWGH HVPAAIIDDLREDFRSWDHPIAPSILVNAAGGNNGSWFGLNVAAPNVDDLRNDFMNRDHHVAANIDGLRIGGQGHQVGSSSSKNMEKIIPLSSPNWQQAK VDDNEGWGPHVGSSSSQNLETIISPSSPNPQQEVNQLQKSVDSEELILLHKVPDQGENTTSGSIQATRITEDDVTSQIGKYNDGEVFFDSENEIPSPEKC EDADGIVGSEHIPPVVSAFEGDASSGSVLPEQEKEERISHATLYALDVAVAENVGEKVAVVNAEVDASSGSVLTEQEREERISHLTLDALDEKVGEVNPE VDVAVDLNVSSVEQRVAMGDFSYEISSSSPSNVSIEVLEEIIEAGKDNKRTLFSAVESVMNKMREVELKEKEAEQAEVEAATAGVDMHVQVEELKKMLGH AREANDMHAGEVYGEKAILSTEVKELQARVANLSDERDSALAVLDEMHRVLEERLVAAEELLRAAEKEKFVKEESARKALAYQQFMMEKVVHESKILQEA AEENSKLREFLMDRGHVVDTLQGEISVICQDVLLLKEKIDNRVPLSQSISSSQTSCILASSGSSSRTVLAVDVAPAFGDASPVSKHTSPASSVHAESPRS KDAEASLSSTENDAFEERMIPKEPVLDDEWDLVDVNGHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03290			unknown protein		Lus10028005 [exp]	0	1
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	1.0	0.9330
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	4.7	0.9162
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	7.2	0.9322
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	8.7	0.9272
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	9.2	0.9205
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	14.0	0.9229
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	15.0	0.9098
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	15.5	0.9209
AT1G17070			GC-rich sequence DNA-binding f...		Lus10006830 [exp]	16.2	0.9062
AT4G17900			PLATZ transcription factor fam...		Lus10040082 [exp]	16.7	0.9047

Compare expression of checked genes

Lus10028005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.