Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03290 200 / 6e-57 unknown protein AT4G02880 195 / 2e-55 unknown protein AT5G64980 61 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012381 [exp] 634 / 0 AT1G03290 238 / 2e-71 unknown protein Lus10028005 [exp] 403 / 2e-131 AT1G03290 280 / 2e-84 unknown protein Lus10012382 [exp] 237 / 3e-69 AT1G03290 172 / 1e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139000 [exp] 216 / 3e-63 AT1G03290 268 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028006 pacid=23181258 polypeptide=Lus10028006 locus=Lus10028006.g ID=Lus10028006.BGIv1.0 annot-version=v1.0 ATGGGGTTCAAATGTGTTTATGAGTCTCTGATGGATGTCTTCCCTCAGGTTGACATCCGAATCCTGAGGGCTGTTGCTCTTGAGCATTCAAAGGACCCTG ATTCGGCTGTGGAAGCGGTTCTTTTCGAGATTCTTCCTGCTCTGGGGAGTGAAACCCTCGTTTCCGAACCCACTGATCAGAGACGAGAAGAAGAATGTGA ACTGCAGGAGCAAACTGATCTGTTGCGTTGCAGACCAAGAGATTTAGGGAAGAACGTGTGTGCTTCGTCAGAAGCTTCTTCTTCGAGTTTGCCCCATCAT GTTACCCCTGCTGAGGTAGATACTCCTGAACTGAATTGGGGTCATTCTGTTGCTGGCCCCAGTAATCGTGATGATGTTGACAGCACAGTTGGCCGTGAGC ACATCACTCCTGTTGTCTCTGCGTTAGAAGGAGGCGGAGCAACTTCAGGATGCAATTTCAATAAGCTTGGAGAACCTATTGATGATGCTGGTGCTTTGAC TGATCAAATGAGTGTAGACAGAGTTCCTCATTCTCCTTTGGATTCACTTGATTTGGCTGTTGGGGAGAAAGTTGCTGAAGTAAATGCAGAGGTTCACATT GCTGTCGACTTGAAAGGGTCTGCAGTAGAGCAGGGAGTAGTGGCTATGGGTGATTCTGATACTGGAATTGCAAGCAGTCCAACTAATGTGAGCATTGGGG TTCTGGATGAGATCATTGAATCTGGTAAAGACAACAAGAGAACCTTGTTTTCTGCTGTGGAGTCAGTTATGAACAAAATGAGACAAGTTGAATCAAAAGA GAAAGAAGCAGAACAAGCCGAAGTGGAAGCTGCGACAGCAGGTGTGAACATAAACGTCCAGGTAGAAGAACTCAAGGATATGCTTGGACATGCAAGGGAG GCTAATGATATGGTCGGTAAACACGCAGGAGAGGTGTATGGTGAGAAGGCCATACTATCAACTGAAGAGAAGGAGTTGCAAGCTCGTGTAGCCAATCTTT CGGAGGAACGAGACTCTGCTCTAGCAGTTCTAGATGAGATGCATCGAGTGTTGGAAGAACGATTGAATGCTGCTGAAGAGCTTCTAAGGGCAGCTGAAAA GGAGAAGTCTGACAAGGAAGAGTCTGCACGCAGAGCTCTTGTTGAACAGCAATGTACGATGGAGAAAGTCGTTCACGAGTCGAAGATCCTGCAAGATGCT GCAAAGGAAAATTCGAAGTTGCGGGAATTTCTAATGGATCGTTGTCATGTAGTTGAGACACTGCAAGGAGAGATATCTGTCATCTGTCAGGACGTTCGTT TGCTGAAGGAGAAGATCGACAACCGCGTCCCGTTGAGTCAATCCATCTCTTCCAGCCAGACAAGTTGCATCCTGGCTTCTTCAGGTTTGCCTGCAAGAAC TGCACCAGCTGTGGATGACGTTCCTGCGTTTGGCGATGCATCTATCGTCTCCAAACATACGACTCCTGCATCGTCGTCTGTACACGCACAATCACCTAGG AGCAAAGTTGCTGAAGGTACCCTGTCATCGACCGAGAATGATGCTTGTAAGGGAAGTTCGATCGCGAAAGAGCCGGTTCTGGATGATGGATGGGACATAG TCAATGTCAATGGTGATGTCTGA
AA sequence Show only first row Show all	>Lus10028006 pacid=23181258 polypeptide=Lus10028006 locus=Lus10028006.g ID=Lus10028006.BGIv1.0 annot-version=v1.0 MGFKCVYESLMDVFPQVDIRILRAVALEHSKDPDSAVEAVLFEILPALGSETLVSEPTDQRREEECELQEQTDLLRCRPRDLGKNVCASSEASSSSLPHH VTPAEVDTPELNWGHSVAGPSNRDDVDSTVGREHITPVVSALEGGGATSGCNFNKLGEPIDDAGALTDQMSVDRVPHSPLDSLDLAVGEKVAEVNAEVHI AVDLKGSAVEQGVVAMGDSDTGIASSPTNVSIGVLDEIIESGKDNKRTLFSAVESVMNKMRQVESKEKEAEQAEVEAATAGVNINVQVEELKDMLGHARE ANDMVGKHAGEVYGEKAILSTEEKELQARVANLSEERDSALAVLDEMHRVLEERLNAAEELLRAAEKEKSDKEESARRALVEQQCTMEKVVHESKILQDA AKENSKLREFLMDRCHVVETLQGEISVICQDVRLLKEKIDNRVPLSQSISSSQTSCILASSGLPARTAPAVDDVPAFGDASIVSKHTTPASSSVHAQSPR SKVAEGTLSSTENDACKGSSIAKEPVLDDGWDIVNVNGDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03290			unknown protein		Lus10028006 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	2.4	0.7616
AT4G37700			unknown protein		Lus10011707 [exp]	17.7	0.7321
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Lus10009768 [exp]	19.4	0.7302
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	20.1	0.6795
AT1G47530			MATE efflux family protein (.1...		Lus10002366 [exp]	49.1	0.7221
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10000182 [exp]	63.6	0.7095
					Lus10010046 [exp]	81.0	0.6651
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	84.8	0.6449
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10008383 [exp]	176.1	0.6638

Compare expression of checked genes

Lus10028006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.