Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20890 752 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 213 / 8e-63 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 197 / 4e-57 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT1G24510 195 / 3e-56 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 182 / 1e-51 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 143 / 3e-37 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 139 / 1e-35 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 132 / 3e-33 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 109 / 2e-25 TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 63 / 2e-10 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012380 [exp] 882 / 0 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 744 / 0 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 705 / 0 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 222 / 5e-66 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 206 / 2e-60 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 201 / 1e-58 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 201 / 2e-58 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 196 / 1e-56 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032467 [exp] 194 / 1e-55 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341100 [exp] 691 / 0 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 690 / 0 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 234 / 1e-70 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 226 / 1e-67 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 198 / 2e-57 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 192 / 6e-55 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.008G182300 [exp] 188 / 8e-54 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 187 / 2e-53 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 185 / 2e-52 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.015G042600 [exp] 182 / 1e-51 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10028007 pacid=23181126 polypeptide=Lus10028007 locus=Lus10028007.g ID=Lus10028007.BGIv1.0 annot-version=v1.0 ATGGCGATAGAAGGTATTTTTAAGGATGATGCTAGTGAAGAAAAAGGAGAGCGCGCCAGAATGGCATCTTTTGTTGGTGCTATGGCTATTGCTGACTTGG TGAAGACAACTTTGGGGCCGAAAGGGATGGATAAAATTTTGCAGTCCACTGGAAGAGGTCATGAGGTCACCGTTACCAATGATGGAGCTACCATTTTGAA GTCACTTCACATAGACAATCCAGCTGCTAAAGTCCTTATTGATATTTCGAAAGTCCAGGATGATGAAGTTGGCGATGGAACAACATCTGTAGTTGTCTTA GCTGGTGAATTATTGAGGGAGGCAGAGAAACTTGTTGCAGCAAAAATCCACCCAATGACCATCATAGCAGGATATCGGATGGGTGCAGAGTGTGCCCGGA AGGCTTTGCTTGAAAGGGTAGTGGATAATAAGGCAGATGAAGAGAAGTTCAAGTCAGATCTCATGAAAATTGCGATGACAACTTTGAGCTCGAAAATATT GTCCCAGGATAAGGAACACTTTGGAAAGCTTGCTGTTGATGCTGTTTTGCGGCTACAGGGTAGCACAAACCTAGAATCCATCCAAATCATCAAGAAGCCT GGTGGGTCATTAACGGATTCTTTCTTGGATGAAGGGTTTATTCTTGACAAGAAAATTGGACTGGGTCAACCAAAACGGATAGAAAATGCAAAGATTTTGG TAGCCAACACTGCAATGGACACAGACAAAGTAAAGATTTATGGCGCACGTGTTCGTGTCGATTCAATGGCTAAGGTTGCTGATATTGAAGCAGCCGAGAA GCAGAAGATGCGAGAAAAGGTGGATAAGATAATAGCCCATGGGATAAATTGCTTTGTCAACAGACAATTAATATACAATTTCCCAGAGGAACTCTTTGCA AATGCTGGAGTGCTCGCGATTGAGCATGCAGATTTTGATGGGATTGAACGGCTAGGTTTAGTTACTGGAGGTGAAATCGCATCAACCTTTGACAATCCTG AATCTGTTAAGCTTGGACACTGCAACCTTATTGAGGAAATTATGATTGGAGAGGACAAGTTGATCCATTTTTCTGGTGTTGCAATGGGCCAGGCATGCAC AATTGTACTAAGGGGTGCAAGGGCTCTCATTGCAATCCCAACCACCATCGCAGATAATGCTGGTCTAGACAGTGCTGAGCTGGTTGCACAGCTTCGAGCA GAGCACAACAAGGAAGGGTGCACTGTTGGGATCGATGTCATCTCTGGATCGGTGGGAGACATGGCAGAGCTTGGAATTTCAGAAGCATTCAAGGTTAAAC AAGCTGTGTTGCTTTCTGCAACTGAAGCTGCTGAAATGATCCTCCGAGTCGACGAGATCATCACTTGTGCACCACGAAGAAGAGAGGATAGAATGTAA
AA sequence Show only first row Show all	>Lus10028007 pacid=23181126 polypeptide=Lus10028007 locus=Lus10028007.g ID=Lus10028007.BGIv1.0 annot-version=v1.0 MAIEGIFKDDASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGHEVTVTNDGATILKSLHIDNPAAKVLIDISKVQDDEVGDGTTSVVVL AGELLREAEKLVAAKIHPMTIIAGYRMGAECARKALLERVVDNKADEEKFKSDLMKIAMTTLSSKILSQDKEHFGKLAVDAVLRLQGSTNLESIQIIKKP GGSLTDSFLDEGFILDKKIGLGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMAKVADIEAAEKQKMREKVDKIIAHGINCFVNRQLIYNFPEELFA NAGVLAIEHADFDGIERLGLVTGGEIASTFDNPESVKLGHCNLIEEIMIGEDKLIHFSGVAMGQACTIVLRGARALIAIPTTIADNAGLDSAELVAQLRA EHNKEGCTVGIDVISGSVGDMAELGISEAFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	0	1
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	2.0	0.8636
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	4.9	0.8401
AT4G15640			unknown protein		Lus10012810 [exp]	5.7	0.8514
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	6.0	0.8597
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	10.7	0.8351
AT1G06590			unknown protein		Lus10043409 [exp]	11.7	0.8334
AT5G06360			Ribosomal protein S8e family p...		Lus10021274 [exp]	11.7	0.8316
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	13.0	0.8158
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	13.5	0.8320
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	20.5	0.8250

Compare expression of checked genes

Lus10028007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.