Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028008 pacid=23181213 polypeptide=Lus10028008 locus=Lus10028008.g ID=Lus10028008.BGIv1.0 annot-version=v1.0 ATGGAAGATGCTGCATTTTCATTACCTGAGCGGAGATACGAGACCGGAGTAACAGAGCGGCGCGGCAGCAGTGGAGGAGGAGCGGAAGAAGTGAGTGTTC ATGACGACGGAGCAACGACGACGCGTCAATTCAGTCGATACCAGAGGGAGGCATTCCGCATCCTCGCCGAACGAGGACGCGTCAATTCAGAACGATTCCG TATGCATTTCGAAAGGTTTTGGGAGCGAACGGAATCACTCCCCGCCGGATTAGCACGCGGTCCGTTAGAAACGAGGGAATGGGATACCAGGAAAAGACGA ATCGGCGATTGA
AA sequence Show only first row Show all	>Lus10028008 pacid=23181213 polypeptide=Lus10028008 locus=Lus10028008.g ID=Lus10028008.BGIv1.0 annot-version=v1.0 MEDAAFSLPERRYETGVTERRGSSGGGAEEVSVHDDGATTTRQFSRYQREAFRILAERGRVNSERFRMHFERFWERTESLPAGLARGPLETREWDTRKRR IGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028008 [exp]	0	1
AT3G01490			Protein kinase superfamily pro...		Lus10030868 [exp]	1.7	0.6468
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	6.6	0.5901
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	12.5	0.5493
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	15.7	0.5605
AT1G15780			unknown protein		Lus10025449 [exp]	25.7	0.5174
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10033877 [exp]	33.0	0.5093
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	35.9	0.5391
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10036008 [exp]	40.4	0.4687
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031480 [exp]	52.4	0.5040
AT5G36930			Disease resistance protein (TI...		Lus10026707 [exp]	54.1	0.4671

Compare expression of checked genes

Lus10028008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.