Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59550 57 / 6e-10 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G29840 56 / 7e-10 RING/U-box superfamily protein (.1) AT1G18770 54 / 7e-10 RING/U-box superfamily protein (.1) AT4G12140 55 / 9e-10 RING/U-box superfamily protein (.1) AT1G18760 55 / 1e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G46620 55 / 2e-09 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60820 54 / 3e-09 RING/U-box superfamily protein (.1) AT4G05350 54 / 3e-09 RING/U-box superfamily protein (.1) AT4G12190 50 / 5e-09 RING/U-box superfamily protein (.1) AT5G53910 53 / 7e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012376 [exp] 248 / 9e-86 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10006279 [exp] 98 / 2e-25 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034793 [exp] 89 / 1e-22 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020558 [exp] 86 / 4e-22 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10007628 [exp] 89 / 1e-21 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10017722 [exp] 73 / 2e-16 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10033682 [exp] 68 / 2e-14 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10018167 [exp] 59 / 4e-11 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10025671 [exp] 59 / 6e-11 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 67 / 5e-14 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 65 / 4e-13 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 60 / 2e-11 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.001G103900 [exp] 56 / 4e-10 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.006G216200 [exp] 56 / 5e-10 AT5G02750 175 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 55 / 1e-09 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1) Potri.016G082500 [exp] 55 / 2e-09 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.001G185200 [exp] 54 / 3e-09 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.002G083001 [exp] 54 / 3e-09 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.013G116000 [exp] 54 / 4e-09 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10028009 pacid=23181114 polypeptide=Lus10028009 locus=Lus10028009.g ID=Lus10028009.BGIv1.0 annot-version=v1.0 ATGACGAGTTTCCATCACGGAGCAACAACGATGACCGTATTCAATCGAGCCCCGCCGGAGACATTGCACAGCCGCAGCGATTATGCCGAACAAGTATTTG GGATTCTAGAAAGGTACTTTATGGAACATAGTAGCGATGATCCATGGGATTTTTTGCAAGGATTGGACGACATAGCAGAAAGCACTCTGTCTCTGTTAGA CGGGGCGCCGGATGCGGAGGACTCCACCGCCGGTGAGTACGAAATAAAGAACATGGGTGCTTCCGATTCGGCGATCGAGAAGCTGGAGAGGCTGGAGAAC TTTGACGGCACGGATTGCTGCTGCACGATTTGCTTCGAGGAGATGGGCGGCGGAAGAGTGATTAGGTTGGAGTGTGAGCATGTGTTCGATGAGAGCTGCT TGGTTTCTTGGCTGCAGAATTCGAATGCCTGCCCATTGTGCCGATTCCGAGTTTCGGATTGA
AA sequence Show only first row Show all	>Lus10028009 pacid=23181114 polypeptide=Lus10028009 locus=Lus10028009.g ID=Lus10028009.BGIv1.0 annot-version=v1.0 MTSFHHGATTMTVFNRAPPETLHSRSDYAEQVFGILERYFMEHSSDDPWDFLQGLDDIAESTLSLLDGAPDAEDSTAGEYEIKNMGASDSAIEKLERLEN FDGTDCCCTICFEEMGGGRVIRLECEHVFDESCLVSWLQNSNACPLCRFRVSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10028009 [exp]	0	1
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	3.9	0.8109
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	5.8	0.8062
					Lus10011218 [exp]	7.1	0.8055
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	8.9	0.7703
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	10.0	0.7703
AT5G44410			FAD-binding Berberine family p...		Lus10042383 [exp]	10.2	0.6189
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	11.0	0.7703
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	11.2	0.7400
AT5G46930			Plant invertase/pectin methyle...		Lus10030926 [exp]	13.4	0.5990
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	14.1	0.6880

Compare expression of checked genes

Lus10028009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.