Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03270 572 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 543 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 513 / 2e-179 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 363 / 5e-122 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 361 / 4e-121 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 352 / 2e-116 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 338 / 2e-110 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT3G13070 55 / 1e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 55 / 1e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012375 [exp] 785 / 0 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 558 / 0 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 542 / 0 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 371 / 8e-125 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 359 / 4e-119 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 347 / 3e-114 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 340 / 7e-112 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 326 / 4e-109 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 319 / 4e-104 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202100 [exp] 594 / 0 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 566 / 0 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.009G082300 [exp] 378 / 2e-127 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 365 / 3e-122 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 363 / 5e-122 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 345 / 1e-113 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 334 / 2e-108 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.002G260401 [exp] 49 / 2e-07 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 53 / 4e-07 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028010 pacid=23181130 polypeptide=Lus10028010 locus=Lus10028010.g ID=Lus10028010.BGIv1.0 annot-version=v1.0 ATGTTGGCGGTGAACGCCGTAAACCTAGCCAGAGCGATGTTCCGATTAAACCACATCATTGTCGAGCCCGATGACATGGAATTCGGCACCGCTTGGTGGT TCGTCTACGCCGGCGTCTCCTGCGTCCTCGTCCTGTTCGCTGGAATCATGTCCGGACTCACCTTGGGCTTGATGTCGCTCGGCCTCGTCGACCTCGAGAT TCTCCAGCGGAGCGGCTCCCTCACTGAGAAGAAGCAAGCTGCTGCGATTCTGCCAGTTGTGCAGAAGCAACACCAGCTGCTGGTGACACTGCTGCTTTGC AATGCTTGTGCGATGGAGGCGCTCCCGATATACCTTGACAAGATTTTCACTCCGTTGATTGCTGTTCTGCTCTCCGTTACGTTTATTCTCGCCTTTGGAG AGATCATTCCTCAAGCAGTGTGTTCGAGGTATGGACTTGCTGTTGGTGCTAACTTCGTGTGGTTAGTGCGGATTTTGATGATCATTTGCTATCCCATCGC CTACCCGATTGCAAAGGTTTTGGATGTTCTACTTGGACACAATGACTCCTTATTCAGACGAGCTCAGCTCAAAGCCCTTGTCTCTATACACAGCCAAGAG GCGGGAAAGGGAGGTGAACTCACACATGATGAGACGACAATCATTAGTGGGGCACTTGATTTGACCGAAAAGACGGCAGAGGAAGCTATGACTCCCATAG AATCAACATTTTCCCTGGATGTCAGGTCCAAATTGGATTGGGAAGCAGTAGGCAAAATTCTTGCACGTGGTCACAGCCGCGTTCCGATATATTCAGAAAG TCCAAAAAACATCATTGGTCTTCTATTGGTAAAGAGCCTTCTCACTGTTCGTCCTGAAACTGAAACTCCGGTTAGCTCAGTCTCCATCCGGCGAATGCCT AGGGTTCCATCAGATATGCCTTTGTATGATATCCTTAACGAGTTTCAGCAGGGAAGTAGCCATATGGCAGCTGTGGTAAAGGTCAAGGGCAAGAGCAAGA GCAAGAGTCTAAAATCTAAAACTGATGGAGAAGTACTTATGGAAAGCAAATATGGAAACTCCATCTCCAAGTTGTGTACACCTTTGCTAACCAAGCAAGA TAAATCGGAGAATGTCGTCATTGAAGTTGAAAAGACTTCAAGGCACACCACAAACAAGAAAACTTCGTTGTTTGATGGCATCGGAACAAACAACGTGCCG GAGGATATTGAAGAAGGGGAAGTCATCGGTATCATCACACTCGAAGACGTGTTTGAAGAATTGCTCCAAGAAGAAATCGTGGATGAGACTGATGAGTACA TTGACGTTCATAGAAGAATACGCGTAGCTGCAGCAGCAGCAGCTTCATCGGTGGCACGAGCTCCACCAGTTCGGAGGGTGACTGGTCAAAAACCAGCTAA TAACAACGATAAATCCGCTAATGATATCCAAGGATCGATTCTTGTTCAGGGAGGTCAAGGTAGGCAGCAAGGGCAACATCCAAAGAAGAAGAGCGGAGGC TGA
AA sequence Show only first row Show all	>Lus10028010 pacid=23181130 polypeptide=Lus10028010 locus=Lus10028010.g ID=Lus10028010.BGIv1.0 annot-version=v1.0 MLAVNAVNLARAMFRLNHIIVEPDDMEFGTAWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVDLEILQRSGSLTEKKQAAAILPVVQKQHQLLVTLLLC NACAMEALPIYLDKIFTPLIAVLLSVTFILAFGEIIPQAVCSRYGLAVGANFVWLVRILMIICYPIAYPIAKVLDVLLGHNDSLFRRAQLKALVSIHSQE AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVRSKLDWEAVGKILARGHSRVPIYSESPKNIIGLLLVKSLLTVRPETETPVSSVSIRRMP RVPSDMPLYDILNEFQQGSSHMAAVVKVKGKSKSKSLKSKTDGEVLMESKYGNSISKLCTPLLTKQDKSENVVIEVEKTSRHTTNKKTSLFDGIGTNNVP EDIEEGEVIGIITLEDVFEELLQEEIVDETDEYIDVHRRIRVAAAAAASSVARAPPVRRVTGQKPANNNDKSANDIQGSILVQGGQGRQQGQHPKKKSGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03270			CBS domain-containing protein ...		Lus10028010 [exp]	0	1
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	14.0	0.6917
AT2G33793			unknown protein		Lus10018490 [exp]	15.2	0.6524
AT5G23200			unknown protein		Lus10010192 [exp]	15.3	0.6997
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Lus10035261 [exp]	20.6	0.6633
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	21.6	0.6893
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	22.8	0.6696
AT1G06660		JASON	JASON, unknown protein		Lus10001417 [exp]	45.2	0.6290
					Lus10001494 [exp]	47.8	0.6517
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	59.3	0.6063
AT1G80910			Protein of unknown function (D...		Lus10021811 [exp]	66.2	0.6350

Compare expression of checked genes

Lus10028010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.