Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63090 261 / 4e-87 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 94 / 9e-23 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G01037 72 / 6e-15 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 64 / 5e-12 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 63 / 8e-12 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 63 / 1e-11 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 62 / 1e-11 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G08940 59 / 2e-10 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 56 / 2e-09 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G62990 55 / 5e-09 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000096 [exp] 388 / 1e-136 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012374 [exp] 384 / 1e-132 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 372 / 2e-130 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10034086 [exp] 93 / 3e-22 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10003062 [exp] 93 / 3e-22 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10003059 [exp] 86 / 4e-21 AT2G31290 258 / 1e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10015979 [exp] 66 / 1e-12 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10008711 [exp] 65 / 2e-12 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 65 / 2e-12 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220000 [exp] 265 / 4e-88 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 88 / 2e-20 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.014G096800 [exp] 71 / 2e-14 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 70 / 4e-14 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 67 / 5e-13 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 65 / 3e-12 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 64 / 3e-12 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G244900 [exp] 64 / 6e-12 AT1G06440 503 / 7e-180 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 64 / 6e-12 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 56 / 2e-09 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10028011 pacid=23181221 polypeptide=Lus10028011 locus=Lus10028011.g ID=Lus10028011.BGIv1.0 annot-version=v1.0 ATGCTATTCCAATCACGACCCATTGTCAATTTCGTTCGCGATTCGCTCGTGAACCCTAGATTGGGTATCCAAATCAAGCACATTTCCAGCCTGAAGGTCG TATGGCGGAAGGATCCGAAGCTAGACGAAGCTATCGAGCGAGACAAGAGGTACAAGCTCTGCGCTCGCGTCGTCAGGGAGGTGTTGCACGAACCTGGTCA GGTAATCTGCTTATCTTACCTTGATAAAAGGCGTCAGAGGTTGCGTCTCATGGACAAGATCAAAACTTTCCTCCGTCGGAACCCGTTACTGTTCGATACT TACTACGATCGGGTGAAACCTAAATCGGAACCCGTCCCGTTCGTTCGACCCAGTGATAGGCTGAGGGCGTTTTTGGAAGAGGAGAATAGGATACAGCTTG AGAACGAAGGGTTGGTAGTTTCGAAGCTGTGTAAGTTGTTGATGATGGCGAAGGATAAGGTGATCAGCGCTGATAAGTTGGTTCATGTTAAAAGGGAATT CGGGTTTCCTGATGATTTTATGGTTAGTTTGGTTCCGAAGTATCCGAATTACTTCAGGCTGGTTGGGTTTCCAGGATAA
AA sequence Show only first row Show all	>Lus10028011 pacid=23181221 polypeptide=Lus10028011 locus=Lus10028011.g ID=Lus10028011.BGIv1.0 annot-version=v1.0 MLFQSRPIVNFVRDSLVNPRLGIQIKHISSLKVVWRKDPKLDEAIERDKRYKLCARVVREVLHEPGQVICLSYLDKRRQRLRLMDKIKTFLRRNPLLFDT YYDRVKPKSEPVPFVRPSDRLRAFLEEENRIQLENEGLVVSKLCKLLMMAKDKVISADKLVHVKREFGFPDDFMVSLVPKYPNYFRLVGFPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10028011 [exp]	0	1
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	21.2	0.6560
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033639 [exp]	22.6	0.6739
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033640 [exp]	23.0	0.6713
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	72.9	0.6176
AT4G17140			pleckstrin homology (PH) domai...		Lus10039773 [exp]	84.0	0.5789
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	91.5	0.5741
AT4G13070			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040896 [exp]	180.0	0.5353

Compare expression of checked genes

Lus10028011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.