Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63095 86 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012374 [exp] 128 / 2e-34 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029648 [exp] 103 / 3e-26 AT3G63095 87 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028014 [exp] 76 / 2e-16 AT3G63095 77 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012373 [exp] 76 / 2e-16 AT3G63095 77 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139100 [exp] 86 / 3e-21 AT3G63095 76 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G022700 [exp] 75 / 4e-17 AT3G63095 68 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G139200 [exp] 73 / 3e-16 AT3G63095 69 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G215200 [exp] 71 / 2e-15 AT3G63095 69 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028013 pacid=23181259 polypeptide=Lus10028013 locus=Lus10028013.g ID=Lus10028013.BGIv1.0 annot-version=v1.0 ATGAAAAGTGTGAGACCTTTTCTGTTATTCTATTTTGCAGCCATTCTAGTGTCCAAGACAGATGCACAGGGTCACAGACCTCCACTCTGCCATTCACAGT TCTCACTTGCCAACTACGCCTGCTCGAACTTGCCATTCATCGAACTCCCACATGCTGCCGCTGTTAATCGTCCTTCTCCACCGACATCTCCAGCCACTTC ACTCGTTGACCTTGCTGCTAATCACGGTCGAAGCAATAGACATGGACGAAGTAGCAGACATGGACGACGAAACAGAAGAGATGACCATGATGAAGATGAT AATGAGCATAACGGGGGTCACCACAGGCACGGGGGGCACCACAGGGACGGGGGCCACCACAGGCACGGGGGCCACCATAGACACGGGCTAGGGCAGGAGC ATCAACCAGAACACGAGAATAGGCATCAGCATCACCACCATCATAATTCGGTGAAAACTGCAGAAGACAACTGCTGCATGTGGCTAACCCGGATGGACTC GGAATGTGTATGTGACGTGTTAGTTCGATTGCCACCGTTTCTTGCGAAACCTTCTCATACGTATACCGTCTATGTCAGCGATGCGTGTGTTGTTACCTTC GAATGCTCGGGCCGGATAGTGCCTTGA
AA sequence Show only first row Show all	>Lus10028013 pacid=23181259 polypeptide=Lus10028013 locus=Lus10028013.g ID=Lus10028013.BGIv1.0 annot-version=v1.0 MKSVRPFLLFYFAAILVSKTDAQGHRPPLCHSQFSLANYACSNLPFIELPHAAAVNRPSPPTSPATSLVDLAANHGRSNRHGRSSRHGRRNRRDDHDEDD NEHNGGHHRHGGHHRDGGHHRHGGHHRHGLGQEHQPEHENRHQHHHHHNSVKTAEDNCCMWLTRMDSECVCDVLVRLPPFLAKPSHTYTVYVSDACVVTF ECSGRIVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028013 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	5.1	0.8338
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	7.9	0.8166
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	22.4	0.7854
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10007273 [exp]	27.0	0.7976
AT5G43490			unknown protein		Lus10002352 [exp]	34.6	0.7523
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	35.7	0.7548
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	38.2	0.7582
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	41.4	0.7150
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	45.5	0.7039
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	48.7	0.7344

Compare expression of checked genes

Lus10028013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.