Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63095 76 / 3e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012373 [exp] 231 / 2e-75 AT3G63095 77 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029648 [exp] 84 / 1e-18 AT3G63095 87 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028013 [exp] 76 / 3e-16 AT3G63095 37 / 0.009 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012374 [exp] 75 / 6e-15 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215200 [exp] 77 / 2e-17 AT3G63095 69 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G139100 [exp] 77 / 3e-17 AT3G63095 76 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G139200 [exp] 76 / 5e-17 AT3G63095 69 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G022700 [exp] 72 / 2e-15 AT3G63095 68 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028014 pacid=23181188 polypeptide=Lus10028014 locus=Lus10028014.g ID=Lus10028014.BGIv1.0 annot-version=v1.0 ATGATGAAACCTCATGTGTTGTTACTCCTCTTAACTTGTGCATCACTTCTAACAACTCCTGCCTTCTCGTCTGACCCGGTCCCTAAACTCCCACGACCTT CTCCCTTCCGCCCTCTATGCGTCTCTCAAATCGCGCTCGCCAACTATGCATGCACGAGTGTCGTTCCTGGTCTCCCCGTCGGTAATAGCCCGACTGTCCC TTCTGCCTTCGGTACTATGCCGGAGCCGTCTGAAATCCTATATGCGGATGCCAGGCAGGAGGACGACAACGACAATGACGATGGCCAATCTACTAGAGGA GGAGAAGATGGACCGACAGAAGGAGGTGGCGGAGGAGGAGGTGGGAGTAGTAGCGGCAGTGGTACTCAGAGACACCGCCGCCATCCCCATCCTCGCCGTG AGCATGAAAATGCTCACAACGGCGGGGATGGCCACAACAGTGATACTACCACTTCTACTCCTAGACATCACCACCGAAGTGGTGCAGGACATGGGGGGCA TCGCCGTCGTGGCCACAGGAGCACTAGCCCTGGTGGGCACGATGGTAATGATGATAATGATCGTAACGATGATGAGGGTGATGATGACGAGGATGATGAC GATGACAACGGGCAGTTGCCACCTATGTCGCCGGCGGAGAACAACTGTTGCAAGTGGATTAGGGATGTGGATGATGAATGTGTGTGTGAGTTGCTGATGA GGTTGCCAACTTTCTTGGCTAGGCCGTTCCATGAGTACACCATTACGGTTAGTGAGTGGTGCAAAGTTACTTACTCTTGCGGTGGAAGGCCTAGACCTTG A
AA sequence Show only first row Show all	>Lus10028014 pacid=23181188 polypeptide=Lus10028014 locus=Lus10028014.g ID=Lus10028014.BGIv1.0 annot-version=v1.0 MMKPHVLLLLLTCASLLTTPAFSSDPVPKLPRPSPFRPLCVSQIALANYACTSVVPGLPVGNSPTVPSAFGTMPEPSEILYADARQEDDNDNDDGQSTRG GEDGPTEGGGGGGGGSSSGSGTQRHRRHPHPRREHENAHNGGDGHNSDTTTSTPRHHHRSGAGHGGHRRRGHRSTSPGGHDGNDDNDRNDDEGDDDEDDD DDNGQLPPMSPAENNCCKWIRDVDDECVCELLMRLPTFLARPFHEYTITVSEWCKVTYSCGGRPRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028014 [exp]	0	1
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	7.5	0.6928
AT3G19940			Major facilitator superfamily ...		Lus10028729 [exp]	8.2	0.7206
					Lus10029509 [exp]	15.9	0.5912
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	20.6	0.5866
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	22.4	0.5764
AT1G04560			AWPM-19-like family protein (....		Lus10023713 [exp]	23.9	0.6240
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10019645 [exp]	24.3	0.6033
AT2G26730			Leucine-rich repeat protein ki...		Lus10042135 [exp]	58.0	0.4627
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10027109 [exp]	67.8	0.4518
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	70.0	0.4729

Compare expression of checked genes

Lus10028014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.