Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63110 315 / 2e-106 ATIPT3 isopentenyltransferase 3 (.1) AT5G19040 308 / 4e-104 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 273 / 4e-90 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G19160 223 / 1e-70 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G68460 219 / 7e-69 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT1G25410 211 / 9e-66 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT4G24650 196 / 3e-60 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT2G27760 111 / 2e-27 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 87 / 7e-19 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012372 [exp] 615 / 0 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10004428 [exp] 277 / 8e-92 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 272 / 7e-90 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034334 [exp] 223 / 9e-71 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 214 / 3e-66 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 205 / 2e-63 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10006281 [exp] 133 / 6e-35 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10020566 [exp] 125 / 3e-32 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10012051 [exp] 81 / 1e-16 AT5G20040 505 / 1e-177 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139300 [exp] 346 / 7e-119 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.010G030500 [exp] 306 / 3e-103 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G202200 [exp] 303 / 8e-102 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.004G150900 [exp] 258 / 5e-84 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 241 / 2e-78 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G121500 [exp] 223 / 3e-70 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 216 / 2e-67 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.009G147600 [exp] 123 / 3e-31 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 97 / 2e-22 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10028015 pacid=23181256 polypeptide=Lus10028015 locus=Lus10028015.g ID=Lus10028015.BGIv1.0 annot-version=v1.0 ATGGCAGTGTGCCAGCAATTACCAATCTGCCCTCCTCCTCTTGAAATTCCGGCCGGAATGCTGAAATTACTAAACAGACCTCCGCAGATTCCCACGTGGC AGAAGGAGAAGAAGCTCGTTGTCATTATGGGCGCCACGGGGACAGGGAAATCCAGGCTGTCAATCGACCTGGCGACCCAGTTCAAACCGGGAGAAATCAT TAACTCCGACAAGATGCAAGTCTACAAGGGACTCGACTTCGTCACCAACAAGATCGCAGGCGACGAAATGCGCGGTGTCAACCACCACCTGCTCGGCACC GTCAATCCCGACTCCGATTTCACCTCCGGGAACTTCTGCCACTCGGCCTCCTCGGCGATCGAATCGATTTTGATGAAGGGGTCGCTCCCGATTGTTGTTG GAGGATCGAACTCCTATGTCGAGGCCCTCCTGGACGATCGGGATGATGATGAGTTTCGATTCGAGCCCGGGCCCAGGTACGACTGTTGCTTCCTCTGGCT AGACGTCTCGATCCCGGTCTTGCACGAGTTCGTGTCGAACCGGGTCGACCAGATGGTCGAGAACGGAATGGTGGAGGAAGTTCGGGCAATGTTCGACCCG AGCCGGCCTCATTCCTCGAAAGGAATTCGAAAATCGATCGGAGTTCCGGAGCTAGACACGTTCCTCAGAGCCGAATTGTGTAGTGGAGTGACTCAAGAGA CGAAAGCTAAACTACTTAAGGAAGCGATCAGAGAGATAAAGAGAAACACTTGCGAACTGGCTTGCAAACAACTGTCGAAAATCCGACGGCTAAAGACCGT GAAAGGATGGAACCTCCACCGGATCGACGCCACAGAAGTGTTCAGAAAACAAGGAAAGGTTGACGAGATGAACGAGGCGTGGGAGAAGTTGATTGTCAGG CCTAGCTCGACCGTGGTACGAAAATTTCTATACAATGTGGGTCGATCAACTATCCCGAGCCGCGAGATTGTGATCCCGACGAGGAGTGTGGTGCCTCGCA ATGGCTATAGTCTTGTGACATAA
AA sequence Show only first row Show all	>Lus10028015 pacid=23181256 polypeptide=Lus10028015 locus=Lus10028015.g ID=Lus10028015.BGIv1.0 annot-version=v1.0 MAVCQQLPICPPPLEIPAGMLKLLNRPPQIPTWQKEKKLVVIMGATGTGKSRLSIDLATQFKPGEIINSDKMQVYKGLDFVTNKIAGDEMRGVNHHLLGT VNPDSDFTSGNFCHSASSAIESILMKGSLPIVVGGSNSYVEALLDDRDDDEFRFEPGPRYDCCFLWLDVSIPVLHEFVSNRVDQMVENGMVEEVRAMFDP SRPHSSKGIRKSIGVPELDTFLRAELCSGVTQETKAKLLKEAIREIKRNTCELACKQLSKIRRLKTVKGWNLHRIDATEVFRKQGKVDEMNEAWEKLIVR PSSTVVRKFLYNVGRSTIPSREIVIPTRSVVPRNGYSLVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	0	1
AT1G60783			unknown protein		Lus10026693 [exp]	1.4	0.9396
					Lus10033727 [exp]	3.2	0.9043
AT5G61820			unknown protein		Lus10033851 [exp]	3.5	0.9143
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	3.7	0.9133
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	4.2	0.9330
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	6.3	0.9091
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	6.6	0.9195
					Lus10025141 [exp]	6.7	0.9209
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	10.7	0.9186
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003944 [exp]	13.4	0.8894

Compare expression of checked genes

Lus10028015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.