Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03260 276 / 6e-93 SNARE associated Golgi protein family (.1) AT5G19070 253 / 8e-84 SNARE associated Golgi protein family (.1) AT1G22850 64 / 2e-11 SNARE associated Golgi protein family (.1) AT4G09580 53 / 7e-08 SNARE associated Golgi protein family (.1) AT1G71940 44 / 4e-05 SNARE associated Golgi protein family (.1.2) AT1G12450 44 / 8e-05 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012371 [exp] 350 / 4e-122 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 256 / 1e-84 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 254 / 5e-84 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 231 / 3e-75 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 112 / 2e-27 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10006162 [exp] 61 / 2e-10 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 61 / 3e-10 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030800 [exp] 268 / 1e-89 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 262 / 2e-87 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 68 / 7e-13 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 67 / 9e-13 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.019G083500 [exp] 44 / 5e-05 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.001G140200 [exp] 42 / 0.0002 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.003G094000 [exp] 42 / 0.0002 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10028016 pacid=23181120 polypeptide=Lus10028016 locus=Lus10028016.g ID=Lus10028016.BGIv1.0 annot-version=v1.0 ATGGCCTCGTCTTCAGACGGTGGCGGAGGAGGCTTCTCTCCAGGTTGCGAACGTTCTCCTTCACCTGGGGTTTCGCTCTCAGGGTTGTGCTTTTCCTCGC TGCCGCCGGTGCTCTCTACTCCGGTTTCTCTTCCCTTTCTGTTGAGAAGGCGCAAGCTGAAGGACCTCCTTCTATGGATTAAAGAGGATCTTGGTCCTTG GGGTCCGCTTGCTTTGGTTCTTGTGTACATTCCTCTCACAATTCTTGCAGTTCCTGCTTCTGTTCTCACTCTTGGTGGCGGTTACCTTTTTGGTCTTCCG GTAGGATTTATTGCAGATACCATTGGTGCCACGTTAGGTGCAACTGCTGCTTTCCTTGTTGGTAGAACAGTTGGAAGGCCATACATCATTTCCAAGTTAA AGAACTATCCCAAGTTTCAAGCTGTCAATATAGCAGTTGAGAGATCTGGCTTCAAGATAGTTTTGCTCCTTCGGCTTGTTCCCTTACTTCCATTTAACGT CCTGAATTACCTCCTGTCTGTGACTCCTGTTCATGTAGGGGACTTCATGTTGGCATCTATGCTTGGGGTGATGCCAATAACATTTGCACTAGTCTATGTT GGGACAACTCTGAAAGACCTCTCTGCTATAACACATGGATGGCATGACGCCTCAAAGCTGCGCTGGGTGTTCATGCTGATGGGCGTTGCAGTATCTGGTG CTCTCTTCTTCATGATTGTCAGAATCGCCAAGACTTCTCTGGAGAAAGCGCTGGCCGAAAACGGTGGCTTGGAAGCTACAGCAATGCTACCGGTGGTGAC AGATACCACGACGACTTCATCACTGCCTCTCGTAATTACGATCGATCCAGCGGGAGGGCGATGA
AA sequence Show only first row Show all	>Lus10028016 pacid=23181120 polypeptide=Lus10028016 locus=Lus10028016.g ID=Lus10028016.BGIv1.0 annot-version=v1.0 MASSSDGGGGGFSPGCERSPSPGVSLSGLCFSSLPPVLSTPVSLPFLLRRRKLKDLLLWIKEDLGPWGPLALVLVYIPLTILAVPASVLTLGGGYLFGLP VGFIADTIGATLGATAAFLVGRTVGRPYIISKLKNYPKFQAVNIAVERSGFKIVLLLRLVPLLPFNVLNYLLSVTPVHVGDFMLASMLGVMPITFALVYV GTTLKDLSAITHGWHDASKLRWVFMLMGVAVSGALFFMIVRIAKTSLEKALAENGGLEATAMLPVVTDTTTTSSLPLVITIDPAGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03260			SNARE associated Golgi protein...		Lus10028016 [exp]	0	1
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	3.0	0.6566
AT1G01760			adenosine deaminases;RNA bindi...		Lus10017815 [exp]	4.9	0.6208
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	21.4	0.6470
AT1G34570			Essential protein Yae1, N-term...		Lus10019775 [exp]	31.7	0.5762
					Lus10022865 [exp]	32.0	0.5954
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10037429 [exp]	42.2	0.6066
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	44.3	0.6024
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	59.9	0.5877
AT5G15430			Plant calmodulin-binding prote...		Lus10021647 [exp]	76.4	0.5688
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10011632 [exp]	93.9	0.5338

Compare expression of checked genes

Lus10028016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.