Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03250 316 / 2e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012370 [exp] 507 / 0 AT1G03250 318 / 2e-110 unknown protein Lus10028018 [exp] 90 / 4e-21 ND 39 / 5e-04 Lus10028019 [exp] 80 / 1e-17 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10003724 [exp] 77 / 2e-16 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10015472 [exp] 76 / 4e-16 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10012369 [exp] 71 / 2e-14 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10011894 [exp] 50 / 3e-07 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10022828 [exp] 49 / 6e-07 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10033450 [exp] 45 / 3e-05 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G046400 [exp] 326 / 2e-110 AT1G03250 318 / 8e-111 unknown protein Potri.005G208400 [exp] 41 / 0.0003 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G024404 [exp] 43 / 0.0006 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028017 pacid=23181234 polypeptide=Lus10028017 locus=Lus10028017.g ID=Lus10028017.BGIv1.0 annot-version=v1.0 ATGGCGACACCCGACATCATTCAGCTCATCGACGAACGCCTCCTCTCTTCGCCTCTCTACGATCCTTCCAAAGCTGATGGTGGGAAGTACCGTGGATTGT CAATTGAGAAGAAGATCGAGTTCCTCGAGAACTTGGCTGGCAAAGTTACCAACCGAAGGTCTCGAAGATGGATTAATGATCGTCTTTTGATGGAGCTTGT TCCACGCCTCAATGCAAATGAGATCAAAGGCCTGTTTGCTCCACCACCTTGGGGTGATGTTGTACCACCCTCTGCATTTTCCATGACCAACATGGGAGAG TGGGAGAAATTTAGGAATATAGACATGGACAAACAGGCTAATATACTGGACACCTTTGATGATAAGCCTTCATCAAGAAGGAAAGGATCCATCGATGCTG ATAAGATGTCCGCCTTAAACGCTTGGCGAAGAATAGATGCCAGCACCAGAGAAGCTCTTCGTCGCAGCTTTCTTACTGAACTTATAGATGGCTATGAGGT ATGCATACGAGCCTTCATTCAGGAGGACGTGAATGGCGAAGTTCTTACAATAAGGGTTCAAGATCCATTCCACAGACTGTTGCTTCACGGTGTCTGTGAG TTCTACAACTTGGAATCTGTGACCATGTCGGAGACGAAAGGCGGGGAGGAGCTGAAGATGACTAGAATAAACAGAAAGAAGAAGAGAGTCGGTGATGAGC TCCCAAACATCACATTGTCAGGTTTCCTGAAAATGACCAAAGAAGGTGTCTGTCAATCTGAAATTATGTTTACACTCATGGAACACATGTTTACACTCCA ACCCAATCATCCCTCTTCCTCCTACGTCACCCATCTCCTCGAAGCAAATCGTGCAGCAGCAATCCTCACCGTCAAAGTTCTGCAGCCTCTCCAGCTTCTT GATCACCAATTCGAAGCTCCCTTGTTCCGGATTTCGTACTCACCGCTGGTTGTCTCCACGAAGAAGGGATCGAGCCTCCTTGTTACATCCAAAACATGTT CTCTATGCCTTAGCAGCGCCTCTTCGATGGCTCTCCATCGCACTAGTGAACGAATGTCGATCAGGTTGTGGAAATCCCCCGTCTCCGGTCGCAGTCGTTT TTCCGGCCATGGACTCTGCACTCTCCCTAGGGAAACTCTTGATTTGAATTCAGAGACGGAAACCATGGAACTGATTGGCAGAGTTCGAAGGATAGTCGAT TACCTTCGGGCTATGAACACATCGTCCCCTCCGAGGCACCCTATGATATACGCCTACGCCAACTGCACCGGTGGTGTTAACTACGGGGACTGCCATGCGT GTTTGGTCTCGGCCAAACGTACTCTGCTTCGAAAGTGTCCCCATCGAATCCGGGCCAAAGTATTGTTAGACATGTGTTACATGAGGTAG
AA sequence Show only first row Show all	>Lus10028017 pacid=23181234 polypeptide=Lus10028017 locus=Lus10028017.g ID=Lus10028017.BGIv1.0 annot-version=v1.0 MATPDIIQLIDERLLSSPLYDPSKADGGKYRGLSIEKKIEFLENLAGKVTNRRSRRWINDRLLMELVPRLNANEIKGLFAPPPWGDVVPPSAFSMTNMGE WEKFRNIDMDKQANILDTFDDKPSSRRKGSIDADKMSALNAWRRIDASTREALRRSFLTELIDGYEVCIRAFIQEDVNGEVLTIRVQDPFHRLLLHGVCE FYNLESVTMSETKGGEELKMTRINRKKKRVGDELPNITLSGFLKMTKEGVCQSEIMFTLMEHMFTLQPNHPSSSYVTHLLEANRAAAILTVKVLQPLQLL DHQFEAPLFRISYSPLVVSTKKGSSLLVTSKTCSLCLSSASSMALHRTSERMSIRLWKSPVSGRSRFSGHGLCTLPRETLDLNSETETMELIGRVRRIVD YLRAMNTSSPPRHPMIYAYANCTGGVNYGDCHACLVSAKRTLLRKCPHRIRAKVLLDMCYMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03250			unknown protein		Lus10028017 [exp]	0	1
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	3.2	0.9099
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	13.7	0.8840
AT1G18720			Protein of unknown function (D...		Lus10036771 [exp]	14.0	0.8697
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	27.5	0.8730
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	28.5	0.8774
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10036560 [exp]	41.7	0.8673
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10003520 [exp]	52.9	0.8481
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10020487 [exp]	55.9	0.8495
AT5G47090			unknown protein		Lus10035063 [exp]	56.2	0.8521
AT3G62140			unknown protein		Lus10009976 [exp]	63.9	0.8432

Compare expression of checked genes

Lus10028017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.