Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48540 39 / 0.0004 receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012369 [exp] 121 / 5e-36 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10028019 [exp] 117 / 2e-34 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10015472 [exp] 115 / 9e-34 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10003724 [exp] 112 / 3e-32 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10028020 [exp] 99 / 5e-26 ND / Lus10028017 [exp] 90 / 1e-21 AT1G03250 316 / 1e-106 unknown protein Lus10020927 [exp] 63 / 4e-13 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033450 [exp] 60 / 5e-12 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10011894 [exp] 56 / 3e-10 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 45 / 1e-06 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G023788 [exp] 45 / 4e-06 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 45 / 4e-06 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 45 / 8e-06 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 44 / 2e-05 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 44 / 2e-05 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024228 [exp] 44 / 2e-05 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 43 / 3e-05 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 42 / 7e-05 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.002G145400 [exp] 40 / 0.0002 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028018 pacid=23181148 polypeptide=Lus10028018 locus=Lus10028018.g ID=Lus10028018.BGIv1.0 annot-version=v1.0 ATGGTGGGTTCTGGTTGTCGTGATCAAAAGCCATCAAAAGTACTAGCACGAATCCTACTCGCAACATCGTATGGAGTGATCATCATCATCGGGCTCGAGC ATCGGCAGAGCACACCATTGTTCGTGTCGAGCTTGGATGTGAACGAGTGGGGATGCAACCCCTATGAGTTTCCAGCGCACGATGTAAGAAGAGCTCTCAC AGGACCACTTCTACAAAAACTTGTAGATAGTGGATTGTTTGATTTGGATGTTCGGGCTACCAACGCATTGTCCCCTCCGGAGGATCACCCTTTGCTATAT GCCTACGCCAATTGCACCACCGGTCCGATCTCTTACAATGACTGCCATGGATGTTTGAAGTCGGCCAAACAAACTCTGCTTGGAGAGTGCCCCCATCGAC TCGGGGCTCAAGTGCTTTTAGACGTGTGTTATATGAGGTACGAGGAATATGCCTTGTAG
AA sequence Show only first row Show all	>Lus10028018 pacid=23181148 polypeptide=Lus10028018 locus=Lus10028018.g ID=Lus10028018.BGIv1.0 annot-version=v1.0 MVGSGCRDQKPSKVLARILLATSYGVIIIIGLEHRQSTPLFVSSLDVNEWGCNPYEFPAHDVRRALTGPLLQKLVDSGLFDLDVRATNALSPPEDHPLLY AYANCTTGPISYNDCHGCLKSAKQTLLGECPHRLGAQVLLDVCYMRYEEYAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028018 [exp]	0	1
					Lus10035794 [exp]	5.8	0.6099
AT1G29195			unknown protein		Lus10002327 [exp]	9.9	0.7024
					Lus10034545 [exp]	11.2	0.6949
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	12.1	0.6949
					Lus10001089 [exp]	12.5	0.7011
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	13.0	0.6949
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	13.7	0.6949
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	13.8	0.7157
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	14.5	0.6949
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	14.8	0.7262

Compare expression of checked genes

Lus10028018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.