Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70530 44 / 1e-05 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G48540 42 / 5e-05 receptor-like protein kinase-related family protein (.1) AT4G05200 41 / 7e-05 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G60720 40 / 0.0002 PDLP8 plasmodesmata-located protein 8 (.1) AT4G21400 39 / 0.0005 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G21230 39 / 0.0006 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT1G19090 39 / 0.0008 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012369 [exp] 189 / 4e-63 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10015472 [exp] 140 / 2e-43 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10028018 [exp] 113 / 6e-33 ND 39 / 5e-04 Lus10003724 [exp] 101 / 3e-28 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10028017 [exp] 76 / 7e-17 AT1G03250 316 / 1e-106 unknown protein Lus10011894 [exp] 62 / 6e-13 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10022828 [exp] 59 / 7e-12 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10033450 [exp] 56 / 2e-10 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033389 [exp] 53 / 2e-09 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024900 [exp] 50 / 7e-08 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.005G208400 [exp] 49 / 7e-08 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G025900 [exp] 50 / 8e-08 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024404 [exp] 47 / 8e-07 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 47 / 1e-06 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025001 [exp] 44 / 8e-06 AT4G05200 465 / 4e-158 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025650 [exp] 44 / 1e-05 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 42 / 3e-05 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 42 / 3e-05 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 42 / 6e-05 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028019 pacid=23181251 polypeptide=Lus10028019 locus=Lus10028019.g ID=Lus10028019.BGIv1.0 annot-version=v1.0 ATGGGAGCAGTACTTGCACTGCTAGTGGTGGCAATCGCTGGAGTACTGATCATCGGACCTCATCATGTCGCGAGCCTCGAAGTGAAAAATTGGGAATGCA ACACCTCCGAGTACCCACCACACGACGTAAAGAGAACCCTCGTCCAAATCCTTCTACAAGAACTGGTGGACAGCAGATTACCATATTGGAAAGTCCGTGG CCTGGGGACATCGATTCCTAGCAAGAACCCTTTGATTTACGCCTACGCCAACTGCACTGGTGCTGCTGATCCTTGGTACCATGACGATGATTGTAGCCCA TGTCTGAGGCTGGCGAAACAAAGCCTACTTCGTAATTGTCCCCATCGAGTCGGGGCAAAAGTGTACTTCGACTCTTGTTATATGAGGTATGAAAATTACT TCTTCTAA
AA sequence Show only first row Show all	>Lus10028019 pacid=23181251 polypeptide=Lus10028019 locus=Lus10028019.g ID=Lus10028019.BGIv1.0 annot-version=v1.0 MGAVLALLVVAIAGVLIIGPHHVASLEVKNWECNTSEYPPHDVKRTLVQILLQELVDSRLPYWKVRGLGTSIPSKNPLIYAYANCTGAADPWYHDDDCSP CLRLAKQSLLRNCPHRVGAKVYFDSCYMRYENYFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10028019 [exp]	0	1

Compare expression of checked genes

Lus10028019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.