Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26594 99 / 2e-27 ARR24 response regulator 24 (.1) AT3G04280 80 / 5e-20 ARR22 response regulator 22 (.1.2.3) AT2G47430 58 / 1e-10 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT1G27320 44 / 1e-05 AHK3 histidine kinase 3 (.1) AT5G10720 39 / 0.0007 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005407 [exp] 116 / 3e-34 AT5G26594 135 / 2e-41 response regulator 24 (.1) Lus10004775 [exp] 81 / 1e-20 AT5G26594 98 / 2e-27 response regulator 24 (.1) Lus10029849 [exp] 61 / 1e-11 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10033746 [exp] 55 / 2e-09 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10031600 [exp] 54 / 4e-09 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10000105 [exp] 43 / 4e-06 AT5G10720 114 / 7e-31 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10000137 [exp] 43 / 6e-06 AT5G10720 113 / 1e-30 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020114 [exp] 42 / 1e-05 AT5G10720 177 / 2e-52 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10026917 [exp] 43 / 3e-05 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108000 [exp] 112 / 9e-33 AT5G26594 163 / 5e-53 response regulator 24 (.1) Potri.002G253000 [exp] 112 / 1e-32 AT5G26594 171 / 5e-56 response regulator 24 (.1) Potri.019G024900 [exp] 77 / 5e-19 AT5G26594 121 / 2e-36 response regulator 24 (.1) Potri.019G025000 [exp] 69 / 7e-16 AT5G26594 117 / 2e-34 response regulator 24 (.1) Potri.003G177400 [exp] 70 / 4e-15 AT3G04280 99 / 9e-26 response regulator 22 (.1.2.3) Potri.001G050900 [exp] 70 / 5e-15 AT3G04280 83 / 4e-19 response regulator 22 (.1.2.3) Potri.003G177300 [exp] 69 / 7e-15 AT3G04280 96 / 8e-25 response regulator 22 (.1.2.3) Potri.003G172750 [exp] 59 / 3e-12 AT3G04280 80 / 1e-20 response regulator 22 (.1.2.3) Potri.001G050800 [exp] 61 / 4e-12 AT5G26594 77 / 4e-18 response regulator 24 (.1) Potri.003G172866 [exp] 62 / 6e-12 AT3G04280 85 / 2e-19 response regulator 22 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10028021 pacid=23181139 polypeptide=Lus10028021 locus=Lus10028021.g ID=Lus10028021.BGIv1.0 annot-version=v1.0 ATGGGATCTGAAGATAGCAATAAGTACAGTATGATCAAAGCTCTAGTTGTGGACGACGAACCGGTCGCGAAGCTTCTCCACGCCAAATATCTGGAGAAAA TCGGCATTATGAACCACAAGGTTGTCAGCAATGGCAAGGAAGCTGTCGAATTGGTTACTTCGTTGGGTGTCGAATATTTCGATGTCATTCTCATGGATAT CGATATGCCTCTTATGAACGGAATCACGGCAACAAAGAAGCTGCGTGACATGGGAGTACGGAACATGATCGTGGGGGTATCGTCGCGTTCACGAACTGAT GAACTGATCATAGCAACTATGGAGAGTGGAATTATGGATGATTACGTACTGAAACCTTTAATCCCTGCCAATGTCATCTCTTTTGCAGAGAAGATTATTC AAAGCTCTGCTTAA
AA sequence Show only first row Show all	>Lus10028021 pacid=23181139 polypeptide=Lus10028021 locus=Lus10028021.g ID=Lus10028021.BGIv1.0 annot-version=v1.0 MGSEDSNKYSMIKALVVDDEPVAKLLHAKYLEKIGIMNHKVVSNGKEAVELVTSLGVEYFDVILMDIDMPLMNGITATKKLRDMGVRNMIVGVSSRSRTD ELIIATMESGIMDDYVLKPLIPANVISFAEKIIQSSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26594		ARR24	response regulator 24 (.1)		Lus10028021 [exp]	0	1

Compare expression of checked genes

Lus10028021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.