Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27310 150 / 5e-42 F-box family protein (.1) AT2G36090 112 / 3e-28 F-box family protein (.1) AT3G44326 109 / 6e-27 F-box family protein (.1) AT4G24210 49 / 6e-07 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 47 / 2e-06 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003731 [exp] 724 / 0 AT2G27310 160 / 3e-46 F-box family protein (.1) Lus10021330 [exp] 128 / 6e-34 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10017006 [exp] 123 / 1e-31 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10013309 [exp] 103 / 1e-24 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10042637 [exp] 48 / 2e-06 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10001172 [exp] 44 / 4e-05 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054500 [exp] 602 / 0 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.005G208200 [exp] 596 / 0 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.001G452000 [exp] 177 / 7e-52 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.004G199300 [exp] 162 / 1e-46 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 150 / 4e-42 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.006G208400 [exp] 121 / 4e-31 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.014G165700 [exp] 51 / 1e-07 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G122300 [exp] 46 / 7e-06 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 46 / 8e-06 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028024 pacid=23181214 polypeptide=Lus10028024 locus=Lus10028024.g ID=Lus10028024.BGIv1.0 annot-version=v1.0 ATGACCTTTCCGGTAACGCAAGTCGACAGCGTGTCCTCGTTAAGCTGCGATCTCTTCTACGACATATTGAAACGACTTGATGGCTCGACCTTAGCCACTG CAGCATGTACATGTGCTGCGTTCTGCTCCATCTCAAAAGAGGAGAGGTTATGGGAAAATGTCTGCTCTTCTATGTGGCCTTCGACCGATAGGGAAGATGT AAAAAGCTTAATCTCATCGCTCGGAGGATTCAGAAAGTTCTACGCAGATTGTTTCCCGCTGATCGTCAACAAGGAGTTCTCCGAGTATCAATGGCGGGAG TATCTTCAGTATCCGGAAGAATGGGCCGAGGCAGAATACTACGGAGATTTAGACGAATACGAGAGTGTATCTCCATCGGATTTCGTCTCCATTGTTGATA TCCGGTACAAAGATCGAACGGTATGTTCGAAAGTCCTGTGGGGGATTCCGCATGCCAATGGATTCAACGGTTGGTTCCACAACTGCCCCTTTCGGATCGA TCTACTCAGCGACAGTACTGAAGGTGAAGTCTTCCTTTCGGTGAACGATGGCCTGCCGGAAATTACATCCATGGAGAAAGAGAGAAAAGACGGGAAGCTA TGGAAGGAGCTTCGAGACGGTCTTCGACTCAGTTGGATAGTCGTGAACACGAAAAACAAGCAGGCTGCCAATCTGGCGAGCTGGAGTCCGCTCGGGGGAC AGAGGCACTGGCCGACCGATAAGGATTTCGTGATCCGATTCGGATCAGTTCTTTCCGCAACAGACATTGTTCCACGTCAGGTCGTGGAGTGTATTCTCAT GATGAAGTTCAGAGTTGTGGTAGAAGGTGTTGGGACGAGGCTGAAGCTTAGCGAGCTTAGCATGCAGTTGGAGGACATGGAAGGAGCTCATGTTAATGGA AGGAATAGCTTGCTGATTTTGAAGGAAGCGCTGAGCTGTAGGAGGAGCAAGAACTATAGCGAGGTTCTGGAGTCGTGTCATTTGTACTCGAAAGTGCAGA GCGAGTTGAAGGAGGAGAAGATGAGGAACGAGAGCCGGATAGATAGGTGCTGTATTATAACTGGGATCACAGCTTTTGTGTCGTTCTGGTACTACTTCCT GTGA
AA sequence Show only first row Show all	>Lus10028024 pacid=23181214 polypeptide=Lus10028024 locus=Lus10028024.g ID=Lus10028024.BGIv1.0 annot-version=v1.0 MTFPVTQVDSVSSLSCDLFYDILKRLDGSTLATAACTCAAFCSISKEERLWENVCSSMWPSTDREDVKSLISSLGGFRKFYADCFPLIVNKEFSEYQWRE YLQYPEEWAEAEYYGDLDEYESVSPSDFVSIVDIRYKDRTVCSKVLWGIPHANGFNGWFHNCPFRIDLLSDSTEGEVFLSVNDGLPEITSMEKERKDGKL WKELRDGLRLSWIVVNTKNKQAANLASWSPLGGQRHWPTDKDFVIRFGSVLSATDIVPRQVVECILMMKFRVVVEGVGTRLKLSELSMQLEDMEGAHVNG RNSLLILKEALSCRRSKNYSEVLESCHLYSKVQSELKEEKMRNESRIDRCCIITGITAFVSFWYYFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	1.7	0.8687
AT5G67390			unknown protein		Lus10011080 [exp]	4.5	0.8552
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	6.0	0.8760
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	8.9	0.8385
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10026061 [exp]	10.4	0.8184
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	11.5	0.8760
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	14.7	0.8297
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	15.5	0.8238
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	16.6	0.8306
AT3G53630			unknown protein		Lus10024421 [exp]	17.0	0.8545

Compare expression of checked genes

Lus10028024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.