Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23290 42 / 3e-05 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT4G21230 40 / 0.0002 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G00970 39 / 0.0007 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003735 [exp] 202 / 4e-68 AT4G23210 43 / 3e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (.2), cysteine-rich RLK (RECEPTOR-like protein kinase) 13 (.3) Lus10013257 [exp] 52 / 3e-09 AT4G23300 51 / 3e-08 cysteine-rich RLK (RECEPTOR-like protein kinase) 22 (.1) Lus10007504 [exp] 50 / 5e-08 AT3G22040 42 / 3e-05 Domain of unknown function (DUF26) (.1) Lus10022828 [exp] 49 / 6e-08 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10011894 [exp] 49 / 9e-08 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10028980 [exp] 48 / 2e-07 AT3G21945 39 / 9e-04 Receptor-like protein kinase-related family protein (.1) Lus10003724 [exp] 47 / 3e-07 AT1G70530 45 / 7e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10008656 [exp] 46 / 7e-07 AT4G05200 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10016710 [exp] 47 / 1e-06 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 145 / 6e-46 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.010G108100 [exp] 50 / 7e-08 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.008G133500 [exp] 45 / 4e-06 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.004G025425 [exp] 44 / 9e-06 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G086000 [exp] 44 / 1e-05 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.004G032000 [exp] 43 / 1e-05 AT3G22060 110 / 4e-29 Receptor-like protein kinase-related family protein (.1) Potri.004G024566 [exp] 43 / 2e-05 AT4G05200 177 / 7e-51 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024404 [exp] 43 / 2e-05 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 41 / 0.0001 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.007G120300 [exp] 40 / 0.0001 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028026 pacid=23181225 polypeptide=Lus10028026 locus=Lus10028026.g ID=Lus10028026.BGIv1.0 annot-version=v1.0 ATGAATAATCTCATCCTCAAATCACCAACCTTACCCTTACTCCTCCTCATCCTCCTCCTCTCCACCTTCGCCGGCGGCGTCCCGAACACGAACGTCACGT CACTCCTCTGCAACGCCAACACCTACACCTCCGGCGACCCCTTTGCCATCAGCCTGGACTACGTCGTCGGGGACATCGAGGCAAACGCTCCGGCTCACGA CAAGTACGACTACTACAACATCTCCCCCTTCCCCAACGCCTTCGCCTACGGCCATGGCGTGTGTAATGTCAACATCACTCGCGCTGACTGTGCCGCCTGC CTTGTAGCTGCGAAGACCGCGCTGGTTGCGGGCTGTCCTGACCGGATTGGGGGGCGGTCGGGTCTGGTTGATTGTTTGATTAGGTATGAACAGCGTCCTT TTGTTGATGATCAGTAG
AA sequence Show only first row Show all	>Lus10028026 pacid=23181225 polypeptide=Lus10028026 locus=Lus10028026.g ID=Lus10028026.BGIv1.0 annot-version=v1.0 MNNLILKSPTLPLLLLILLLSTFAGGVPNTNVTSLLCNANTYTSGDPFAISLDYVVGDIEANAPAHDKYDYYNISPFPNAFAYGHGVCNVNITRADCAAC LVAAKTALVAGCPDRIGGRSGLVDCLIRYEQRPFVDDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10028026 [exp]	0	1
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004673 [exp]	7.7	0.8779
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10029460 [exp]	17.1	0.8049
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	17.2	0.8153
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	17.6	0.8582
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	25.5	0.8337
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	29.2	0.8175
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	33.9	0.8210
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015580 [exp]	36.7	0.7713
AT2G31081		CLE4	CLAVATA3/ESR-RELATED 4 (.1)		Lus10015304 [exp]	38.7	0.7780
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	40.7	0.8148

Compare expression of checked genes

Lus10028026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.