Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010115 [exp] 44 / 5e-06 AT5G48540 41 / 5e-05 receptor-like protein kinase-related family protein (.1) Lus10029618 [exp] 42 / 4e-05 ND / Lus10028049 [exp] 41 / 0.0002 AT1G04520 38 / 9e-04 plasmodesmata-located protein 2 (.1) Lus10028026 [exp] 40 / 0.0002 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Lus10016710 [exp] 41 / 0.0003 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10013257 [exp] 39 / 0.0006 AT4G23300 51 / 3e-08 cysteine-rich RLK (RECEPTOR-like protein kinase) 22 (.1) Lus10035754 [exp] 39 / 0.0007 AT5G48540 44 / 6e-06 receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 47 / 1e-06 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G024000 [exp] 48 / 2e-06 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 44 / 3e-05 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G026200 [exp] 40 / 0.0008 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028027 pacid=23181180 polypeptide=Lus10028027 locus=Lus10028027.g ID=Lus10028027.BGIv1.0 annot-version=v1.0 ATGGCTGGTAATTATACGCTCCTACTAATTACGATCATAATTACCGTGATCTCTACGCCGTCGTTTCAAGTTACGGGCAAACGCGAGTGGGCTAACACGA CGCTAGTCCACCGGAGTTGCACGAAGCACACAATCCACAACTCTCGCTACCTGAGGAACGTATTAGTCGTGATGCGCCACGTGGCGGAGCGGACGTCCAC GAAGCACCACTACGACTACCATGTCAGCTCGCCGATGATGCCGACCGTCTATGGCCATGCCAATTGTAGCCGGAGCCTGGTCCCGATATCGTGCGATCGA TGTCTAAGGGTGGCCGGGAGGGAGATGGCTAAGGTGTGTAAGCTCCGGGTCGGTGGTGTTTTGCAGCTCGTTGATTGCCGGCTTAGTACCCTGCTTGAAG TTCCTTCTGCTCAACATCTAAGATCATTTGACGAAAATTCGTTGGAAATTGACCCTGTCCCTTCCCCGTTATCCGACGATAAGCTCTGGCACGCACAACG AGATCATCCCACTTCAAACGAAGCTGGTGTTGAGATCGACGGAAAGGACTTCCATGAAGCACTACTACGACTACAATGCAATTGGTAG
AA sequence Show only first row Show all	>Lus10028027 pacid=23181180 polypeptide=Lus10028027 locus=Lus10028027.g ID=Lus10028027.BGIv1.0 annot-version=v1.0 MAGNYTLLLITIIITVISTPSFQVTGKREWANTTLVHRSCTKHTIHNSRYLRNVLVVMRHVAERTSTKHHYDYHVSSPMMPTVYGHANCSRSLVPISCDR CLRVAGREMAKVCKLRVGGVLQLVDCRLSTLLEVPSAQHLRSFDENSLEIDPVPSPLSDDKLWHAQRDHPTSNEAGVEIDGKDFHEALLRLQCNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028027 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	3.3	0.9410
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021542 [exp]	3.5	0.8848
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016266 [exp]	4.1	0.8149
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	4.7	0.9410
					Lus10035508 [exp]	5.7	0.9410
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	6.5	0.7823
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	6.6	0.9410
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	7.4	0.9410
					Lus10012269 [exp]	8.1	0.9410
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	8.8	0.9410

Compare expression of checked genes

Lus10028027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.