Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08310 149 / 3e-39 unknown protein AT1G44780 104 / 8e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003736 [exp] 513 / 7e-180 AT4G08310 293 / 5e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085000 [exp] 202 / 5e-59 AT4G08310 285 / 2e-90 unknown protein Potri.005G176400 [exp] 164 / 2e-44 AT4G08310 153 / 2e-40 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09649 [flax] [poplar] CHZ Histone chaperone domain CHZ
Representative CDS sequence Show only first row Show all	>Lus10028028 pacid=23181201 polypeptide=Lus10028028 locus=Lus10028028.g ID=Lus10028028.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGAAATCGCAAGCCATCGTGCCGGCGACAAAGGATGCGGCGGAGATCAAGGACGCGACGCCGGATGTCGAGTCCAACATTAGGACTGCTA TGAAGTCCCGCGTCAGCTACTTCAAAGAACAATCCGATTCATTGACATTTGAGGGAGTAAGGAGAGTCTTAGAAGAGGACTTGGGTCTGGAGAAATTTGC CTTGGATGTGCATAAGAGATTTGTGAAGCAAATGCTGCTGGAGAGTTTACAGGGTGCTGTTGCCCACAAGGATTCAACAAAAACTGCGGCTGAAGTTACT TGTTCAATTAAAGAAGATGTTTTGGAAACACCCGAAGGGGATGAATCAAAATCTCATCCAAAGGATTTTAACAGTGAGGAGGAGGAGAAAATGGAAGATT CCCCTGTTATGGGACTTCTGACAGGACAGAAGAAATCTAAGACGGATGTTAACAAAACCAAAGATAACGAGAAGAAAGTTCCTACTGAGAACATCATAAA AAAGGCCATATGGAAGAGGGTATCATATATTGGAGCAAACACTGAAGCAATTACAATGGCAGGATTGCGCCGACTTTTAGAGGAAGATCTTAAACTTGAA AAGGGTGCACTTGATTCATTTAAGAAGTTTATCAGCAGTCAATTAGATGAGGTACTAGAATCTATTGAAGTCAAGGCTTCGAAGAAGAAAACTTCGATGA CTAAATCTCAAAGTAAACCTGCTAAAAAGGTGAGTAAGGTGAAATCAGATTCTTCTGACAATGACGATGATCAAGAGGACATAGATGAAGTAAAACCTAA AAAGAAGACCAGTTCTTTAAAAAAGACAGTGAATTCGGAGGGGTCAAAAAAACGGGGAAGATCAGAGAAAGAATCTAAGGTATCTGCTAAGAAACGAAGT AAGCCTGTGAAATCTCCATCGAATGACGATAGCAAATCAGAGGATGAAGAAAATGTGTCTGAAGATGGTGGTTCACAATCGTCAGGGGAAAAACCAGTGA AGAAAAGGGAGGCTTCTACTGCTGCCACAACATATGGTAAGCGAGTGGAGCATCTGAAATCGACTATCAAAGCTTGCGGGATGAGTGTACCGCCAACTGT ATATAAGAAGGTGAAGCAGGTCCCTGAAAATAAACGAGAGGCTGAGCTAATAAAAGAACTTGAGGCTATACTCTCTAAAGAAAATCTGTCATCAAATCCT TCTGAAAAAGAAATAAAAGAAGTTAGGAGGAAAAAGGAAAGAGCTAAAGAACTAGAGGGCATTGACATGAGTAACATTGTGTCGAGCTCACGTAGAAGGT CCACAAGCAGTTACGTTCCTCCTCCAAAGCCAAAAGTACCAATTGAAAGTGGCAGCGAGAGTGACGAGGAGGATGAGGATGAAGATGAAGATGATGAAGA CGAAGATGATAATAACGAGGATGATGCTGTGGATGAAGAAAGCCAAAGTGAGGAACTTGATGATGGTAAGCAACAAGTTATACCAAACTCCGTGTGA
AA sequence Show only first row Show all	>Lus10028028 pacid=23181201 polypeptide=Lus10028028 locus=Lus10028028.g ID=Lus10028028.BGIv1.0 annot-version=v1.0 MAEEKSQAIVPATKDAAEIKDATPDVESNIRTAMKSRVSYFKEQSDSLTFEGVRRVLEEDLGLEKFALDVHKRFVKQMLLESLQGAVAHKDSTKTAAEVT CSIKEDVLETPEGDESKSHPKDFNSEEEEKMEDSPVMGLLTGQKKSKTDVNKTKDNEKKVPTENIIKKAIWKRVSYIGANTEAITMAGLRRLLEEDLKLE KGALDSFKKFISSQLDEVLESIEVKASKKKTSMTKSQSKPAKKVSKVKSDSSDNDDDQEDIDEVKPKKKTSSLKKTVNSEGSKKRGRSEKESKVSAKKRS KPVKSPSNDDSKSEDEENVSEDGGSQSSGEKPVKKREASTAATTYGKRVEHLKSTIKACGMSVPPTVYKKVKQVPENKREAELIKELEAILSKENLSSNP SEKEIKEVRRKKERAKELEGIDMSNIVSSSRRRSTSSYVPPPKPKVPIESGSESDEEDEDEDEDDEDEDDNNEDDAVDEESQSEELDDGKQQVIPNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08310			unknown protein		Lus10028028 [exp]	0	1
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Lus10032571 [exp]	5.3	0.8011
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	6.0	0.8225
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	7.9	0.8219
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	8.0	0.8169
AT4G08310			unknown protein		Lus10003736 [exp]	9.1	0.8234
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	10.7	0.8045
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	12.4	0.8135
AT3G24150			unknown protein		Lus10019404 [exp]	13.4	0.7906
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10039207 [exp]	13.6	0.7577
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	18.7	0.7782

Compare expression of checked genes

Lus10028028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.