Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44790 256 / 1e-86 ChaC-like family protein (.1) AT5G26220 182 / 2e-57 ChaC-like family protein (.1) AT4G31290 181 / 9e-57 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003737 [exp] 388 / 3e-138 AT1G44790 275 / 2e-94 ChaC-like family protein (.1) Lus10020181 [exp] 176 / 2e-54 AT4G31290 342 / 2e-120 ChaC-like family protein (.1) Lus10026985 [exp] 165 / 3e-50 AT4G31290 332 / 5e-116 ChaC-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176300 [exp] 287 / 4e-99 AT1G44790 289 / 9e-101 ChaC-like family protein (.1) Potri.018G002900 [exp] 181 / 5e-57 AT4G31290 332 / 1e-116 ChaC-like family protein (.1) Potri.006G279000 [exp] 180 / 2e-56 AT4G31290 327 / 5e-115 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [flax] [poplar] AIG2 PF04752 [flax] [poplar] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Lus10028029 pacid=23181161 polypeptide=Lus10028029 locus=Lus10028029.g ID=Lus10028029.BGIv1.0 annot-version=v1.0 ATGCTACTTGTACCGCCCGCCATTGCTGCGATTGGATCATTCGGACTACTCCCTTACTGCTCTTCACCTTCTTCATTTCCCTCACAGCGCTGCCGGGGGA AAAAGAAAGAACACGGCTTGATCGTCAAATCGGATAAAAAAATGGAGGAGATGTGGGTATTTGGGTACGGTTCGCTGATATGGAAAGCTGGGTTCAACTA CGACGACCGCCTCGTCGGATTCGTCAAGGGCTATCGCCGCGTCTTTTACCAAGGCAGCACTGACCACAGAGGCACCCCCGATTTTCCCGGAAGAACAGTC ACCTTGGAGCCTGCTCATGGAGAGATTTGTTGGGGAGTTGCTTACAAAATCTCCAGTAAAGAAGACAGAGATTCTGCTTTAGATCATTTGGAAGTGAGGG AGAAGCAGTATGATGAGAAGGCTTACCTTGATTTCTTCACTGATCCAGCAGCTACAGCTCCTGCAATTTCAGGTGTAATGGTATACATTGGTTCTGCAGA CAAGGAAAGGAACCAGAACTACTTGGGGTCAGCACCCCTGGAAGACATAGCCAAACAAATTGCTTGTGCGCAAGGACCGTCGGGGCCTAACACAGAGTAC CTCTTTAAACTGGAAGCAGCACTTCTCCACATTGGTAAAAGCTTTAAGCTTTATGTATCTCCTGCAGTTGTTGCTTACTGGGAAAGTATGAATGATACGT TGACTAACTGTGGTTTCTGGGTACTGAAGGATGCAAGGATAAACATGTGA
AA sequence Show only first row Show all	>Lus10028029 pacid=23181161 polypeptide=Lus10028029 locus=Lus10028029.g ID=Lus10028029.BGIv1.0 annot-version=v1.0 MLLVPPAIAAIGSFGLLPYCSSPSSFPSQRCRGKKKEHGLIVKSDKKMEEMWVFGYGSLIWKAGFNYDDRLVGFVKGYRRVFYQGSTDHRGTPDFPGRTV TLEPAHGEICWGVAYKISSKEDRDSALDHLEVREKQYDEKAYLDFFTDPAATAPAISGVMVYIGSADKERNQNYLGSAPLEDIAKQIACAQGPSGPNTEY LFKLEAALLHIGKSFKLYVSPAVVAYWESMNDTLTNCGFWVLKDARINM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	0	1
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10009277 [exp]	4.4	0.8748
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	6.9	0.8665
AT1G71180			6-phosphogluconate dehydrogena...		Lus10015455 [exp]	9.5	0.8523
AT3G02555			unknown protein		Lus10027224 [exp]	10.0	0.8553
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10035005 [exp]	19.7	0.8153
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	28.6	0.8159
AT1G63670			Protein of unknown function (D...		Lus10002008 [exp]	28.9	0.8509
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	29.3	0.8328
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	33.3	0.8622
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	37.2	0.8516

Compare expression of checked genes

Lus10028029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.