Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08300 447 / 9e-158 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 444 / 3e-156 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 437 / 1e-153 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 374 / 7e-129 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 368 / 3e-126 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 352 / 9e-120 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 343 / 3e-116 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 306 / 4e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 303 / 1e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 302 / 1e-100 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003738 [exp] 715 / 0 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 374 / 9e-129 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 373 / 2e-128 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 372 / 2e-127 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 370 / 9e-127 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 369 / 2e-126 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 367 / 7e-126 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 362 / 8e-124 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 360 / 6e-123 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085100 [exp] 507 / 0 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 477 / 4e-169 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 385 / 3e-133 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 384 / 2e-132 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 380 / 2e-131 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 373 / 2e-128 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G033500 [exp] 359 / 2e-122 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 353 / 3e-120 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 349 / 2e-118 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 343 / 6e-116 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10028030 pacid=23181190 polypeptide=Lus10028030 locus=Lus10028030.g ID=Lus10028030.BGIv1.0 annot-version=v1.0 ATGGGAGGGAAAGGGAGTTCGTGGTTCGAAATGGTGAAGAAGGCCAAGCCATACTTGGCAATGGTGTCGCTTCAGTTCGGGTATGCGGGGATGTACATCG TGACAATGTTGTCGTTCAAACACGGGATGAACCATTACGTTCTTGGCGTCTATCGCCATGTCGTTGCCACCATCGTCATCGCCCCTTTTGCTCTCATCCT TGAAAGGAAAACAAGGCCAAAGTTGACATTCGGGATATTCTTGCGAATAATAGCCCTTGGTTTTCTCGAGCCAGTGCTGGATCAGAACCTTTATTATGTT GGAATGAAGTACACGTCAGCAACATTTGCATCCGTGTCTGTCAATATCCTGCCTGCCATTACCTTCGTCATGGCCCTAATTTTCAGGCTGGAAAGCGTAA ACCTAAAGAAATTTCACAGCGTGGCCAAGATCATTGGGACCGTGATAACAGTTTCAGGAGCCATGGTTATGACTCTATACAAAGGTCCAATCTTGGAGTT CTTAACCCCTTCGTCGCATTCCTCGCATTCATCGTCAGCTCACGACGCTACCAATGGAGAGCAGAACTGGGTCTTGGGCCCACTCTTTCTTCTCGGCAGT TGCATCGGCTGGTCCGCCTTCTTCATCCTCCAATCGTACACGTTGAGGTTGTATCCGGCTGAGTTGTCGTTGACCGCGTGGATATGCTTGATGGGCACCA TTGAAGGATCCGTCGTTGCACTTGCTGTGGAAAGGGGGAACATGGCCATATGGAAAATAGGATTCGACTCCAGACTTCTTGCTGCTGCTTACACCGGAAT CGTATGCTCGGGAGCTGCATATTACATTCAAGGAGTAGTGATTAAGGAACGTGGACCGGTGTTCGTTACCTCGTTCAGCCCTCTATGTATGATCATCACT GCCATTCTTGGATCCCTTTTTCTTGCTGAGAAAGTCACCCTTGGCAGTTTGATTGGAGCACTCCTGATAGTATGCGGACTTTACACTGTGGTATGGGGGA AGAGCAAAGATCGAAAAATCTCAGCCGAGACTGATGAAATCGAGTGGAAGAATGGAGGTGAAGGGCAGGAGCTGCCTGTTGCGAATGTTGTGACTAATTC TTCAACCCGGTAA
AA sequence Show only first row Show all	>Lus10028030 pacid=23181190 polypeptide=Lus10028030 locus=Lus10028030.g ID=Lus10028030.BGIv1.0 annot-version=v1.0 MGGKGSSWFEMVKKAKPYLAMVSLQFGYAGMYIVTMLSFKHGMNHYVLGVYRHVVATIVIAPFALILERKTRPKLTFGIFLRIIALGFLEPVLDQNLYYV GMKYTSATFASVSVNILPAITFVMALIFRLESVNLKKFHSVAKIIGTVITVSGAMVMTLYKGPILEFLTPSSHSSHSSSAHDATNGEQNWVLGPLFLLGS CIGWSAFFILQSYTLRLYPAELSLTAWICLMGTIEGSVVALAVERGNMAIWKIGFDSRLLAAAYTGIVCSGAAYYIQGVVIKERGPVFVTSFSPLCMIIT AILGSLFLAEKVTLGSLIGALLIVCGLYTVVWGKSKDRKISAETDEIEWKNGGEGQELPVANVVTNSSTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	0	1
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	1.0	0.9448
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006501 [exp]	6.9	0.8990
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	8.7	0.9143
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	8.7	0.9078
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	10.2	0.9107
AT5G67265			unknown protein		Lus10042633 [exp]	12.6	0.8750
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	16.6	0.9044
					Lus10019815 [exp]	16.8	0.8559
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	17.1	0.8620
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	17.9	0.9041

Compare expression of checked genes

Lus10028030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.