Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08280 163 / 6e-53 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003739 [exp] 219 / 5e-75 AT4G08280 137 / 7e-43 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085200 [exp] 178 / 1e-58 AT4G08280 151 / 2e-48 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF05768 [flax] [poplar] DUF836 Glutaredoxin-like domain (DUF836)
Representative CDS sequence Show only first row Show all	>Lus10028031 pacid=23181145 polypeptide=Lus10028031 locus=Lus10028031.g ID=Lus10028031.BGIv1.0 annot-version=v1.0 ATGACGATGAACTTGACGGCGGCGGCAATATCGGCGGCGAGGCCATCTTCCCTGACAATCCTCAACAAACGCACAGCCAGACCACTCTTCACTCCTCTGG CGTCCCTATGCTCTTCTTCTCCAACGAGGAAACTGGTGCTCTACTCAAAGCCCGGATGCTGTTTGTGCGATGGCCTCAAAGAGAAGCTTCAAGCCGCTTT CTCCCTCTCCAGTCCTTCTCCCCTCCACGACGTCGATCTCCAGGTCAGGGATATCACCACCAATCCGGATTGGGAGAAAGCTTACCAGTACGAGATTCCT GTTCTAGCCAAACTCCATTCTGATGGCACCGAAGAGATTCTGCCAAGATTATCGCCACGACTTGGAGTTGAGCTTGTACAGAAAAGGATAGCAGCTGCTT TCACTCAATAA
AA sequence Show only first row Show all	>Lus10028031 pacid=23181145 polypeptide=Lus10028031 locus=Lus10028031.g ID=Lus10028031.BGIv1.0 annot-version=v1.0 MTMNLTAAAISAARPSSLTILNKRTARPLFTPLASLCSSSPTRKLVLYSKPGCCLCDGLKEKLQAAFSLSSPSPLHDVDLQVRDITTNPDWEKAYQYEIP VLAKLHSDGTEEILPRLSPRLGVELVQKRIAAAFTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08280			Thioredoxin superfamily protei...		Lus10028031 [exp]	0	1
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	10.6	0.6193
AT1G56420			unknown protein		Lus10031412 [exp]	13.3	0.6986
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	23.2	0.6442
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10011888 [exp]	35.0	0.5818
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	37.5	0.6200
					Lus10005608 [exp]	84.6	0.5930
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	86.9	0.5883
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	98.8	0.5780
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	105.9	0.5899
AT2G41945			unknown protein		Lus10017230 [exp]	108.4	0.5780

Compare expression of checked genes

Lus10028031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.