Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17710 206 / 7e-64 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 192 / 5e-59 Co-chaperone GrpE family protein (.1.2) AT4G26780 56 / 1e-08 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 48 / 6e-06 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003741 [exp] 584 / 0 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 341 / 2e-116 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10029654 [exp] 322 / 9e-109 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 229 / 3e-73 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10000783 [exp] 51 / 9e-07 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10043180 [exp] 49 / 3e-06 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10032565 [exp] 49 / 4e-06 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10010247 [exp] 47 / 1e-05 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090000 [exp] 271 / 2e-89 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 236 / 4e-76 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2) Potri.013G067900 [exp] 200 / 2e-61 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.015G065800 [exp] 47 / 8e-06 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 47 / 1e-05 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10028034 pacid=23181167 polypeptide=Lus10028034 locus=Lus10028034.g ID=Lus10028034.BGIv1.0 annot-version=v1.0 ATGGCGATTTCGCTCTCGAACCAAACCCTCTTGACCTCTCCTCCTCCGGCTCTCTCTGCTCTCACCTTCCCCAAAACCCTAGACTCCACCAAACCCAAAC CCCTTCTATTCTCCTTCTCTCATCCGAAACCTCTCAAGGGATTGTTGCTCTCTTCTTTCGTGCCTGCGATATCCGTAGTCAGCAGCTGCAGCAAGAAGAG CAGCTTCCATGGCCGTCGCCTCTCCTTCCTTACTCACTGTGCCCAGCAGGAAGCTACATCCGCCGACCCCGAAACGCTTACGAATGAGGAAGAGGGAAAT CTGGATACCGAAAAAGCGGAAGTAGCCGGCAAAGAGGAAACCGAGGGAGAATCAGGAGTAGCCGACAATGATGAACTGGAAGCGATTCCCGAAAATGAAT CCGAGTTGAAGAATCTTTTCTACAGTTACAAGGAAGCTCTTCTTTCTGGCGATGAAGAAGCCGCTTCCGAGATTGAGGCTAAGATAGAAGCTATAGATAG TAACAACAACGAACTCATGCTAAAGGTTTCGGCTTTATCAGCCGAGACATCCTCCAACAGGGACAAGTACATCCGCTTGCAAGCCGATTTTGACAATTTC AGGAAAAGATCAGAAAACGACAGACTGAACATCAGAAGTGACGCCCAAGGAGCAGTGATCGAGAGCCTTCTGCCCATGACAGACAGTTTCGAGAGAGCCA AACAGTCGATAAAGCCAGAAACAGAGAAGGAGAAGCAAATCGATACGAGTTATCAGGGTATATACAAACAATTTTTGGAGATCATGAAAGGTTTGCAGGT GATTGCTGTGCCGACAGTCGGACATCCTTTCGATCCAGAGTTTCACGAAGCGATTGCGAGGGAAGATTCGGAAGAGTACGAGGAAGGAATTGTTCTGCAA GAGTTCCGTCCTGGATTTCGCCTAGGAAACAGGCTGATAAGAGCAGCTATGGTGAAAGTTTCTGCAGGGCCTGGACCTAAAACTGAAGATGCTCCTCCTG CTAGTGTTGACGACCAGGTGGAGCAGGAAGCTGCTACAGAAGGATAA
AA sequence Show only first row Show all	>Lus10028034 pacid=23181167 polypeptide=Lus10028034 locus=Lus10028034.g ID=Lus10028034.BGIv1.0 annot-version=v1.0 MAISLSNQTLLTSPPPALSALTFPKTLDSTKPKPLLFSFSHPKPLKGLLLSSFVPAISVVSSCSKKSSFHGRRLSFLTHCAQQEATSADPETLTNEEEGN LDTEKAEVAGKEETEGESGVADNDELEAIPENESELKNLFYSYKEALLSGDEEAASEIEAKIEAIDSNNNELMLKVSALSAETSSNRDKYIRLQADFDNF RKRSENDRLNIRSDAQGAVIESLLPMTDSFERAKQSIKPETEKEKQIDTSYQGIYKQFLEIMKGLQVIAVPTVGHPFDPEFHEAIAREDSEEYEEGIVLQ EFRPGFRLGNRLIRAAMVKVSAGPGPKTEDAPPASVDDQVEQEAATEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	1.0	0.8940
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	2.8	0.8607
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	3.2	0.8866
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	3.5	0.8568
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10008462 [exp]	3.9	0.8574
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	4.2	0.8687
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	4.9	0.8383
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	7.0	0.8503
AT2G44870			unknown protein		Lus10020395 [exp]	10.9	0.8100
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	11.2	0.7966

Compare expression of checked genes

Lus10028034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.