Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40420 101 / 1e-26 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G27660 99 / 8e-26 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT3G01570 97 / 4e-25 Oleosin family protein (.1) AT2G25890 57 / 2e-10 Oleosin family protein (.1) AT5G51210 54 / 2e-09 OLEO3 oleosin3 (.1) AT4G25140 54 / 3e-09 OLE1, OLEO1 oleosin 1 (.1) AT5G07550 45 / 3e-06 ATGRP19, GRP19 glycine-rich protein 19 (.1.2.3) AT5G07530 42 / 0.0001 ATGRP17, ATGRP-7, GRP17 ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, glycine rich protein 17 (.1.2) AT5G61610 40 / 0.0007 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003742 [exp] 227 / 1e-76 AT3G01570 142 / 1e-43 Oleosin family protein (.1) Lus10014559 [exp] 89 / 5e-22 AT3G01570 159 / 1e-49 Oleosin family protein (.1) Lus10032127 [exp] 87 / 2e-21 AT3G01570 162 / 4e-51 Oleosin family protein (.1) Lus10017460 [exp] 62 / 5e-12 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10028822 [exp] 59 / 4e-11 AT4G25140 146 / 3e-46 oleosin 1 (.1) Lus10039683 [exp] 59 / 8e-11 AT4G25140 159 / 2e-50 oleosin 1 (.1) Lus10027161 [exp] 57 / 2e-10 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10031387 [exp] 57 / 3e-10 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10010943 [exp] 57 / 2e-09 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083400 [exp] 117 / 3e-33 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.015G081901 [exp] 110 / 2e-30 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.T125308 [exp] 110 / 2e-30 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.001G345800 [exp] 83 / 2e-20 AT3G01570 140 / 6e-43 Oleosin family protein (.1) Potri.017G071800 [exp] 77 / 6e-18 AT3G01570 130 / 4e-39 Oleosin family protein (.1) Potri.003G150600 [exp] 57 / 2e-10 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.018G057800 [exp] 56 / 5e-10 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.001G080000 [exp] 56 / 6e-10 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.006G234900 [exp] 52 / 9e-09 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.012G059400 [exp] 42 / 4e-05 AT3G18570 113 / 4e-32 Oleosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10028035 pacid=23181123 polypeptide=Lus10028035 locus=Lus10028035.g ID=Lus10028035.BGIv1.0 annot-version=v1.0 ATGGCCACCGACCGTCGATACGGCGCGGGGTACCAAGACCAACAATACGGCCAGTACGGCGGAGCAGGAGGCCGATACCCCACCACCACCACCACCACCA CCGGAGCCGGCGGAATGGGCGACACGGTAAAAAGCATGCTCCCGGAGCATGGCCCGTCCACCCAACAAATACTAGCGGTGGTCACGCTCCTCCCCTTGGG AGGAATCCTGCTCCTCTTCGCCGGGCTGACCCTGGCGGGGACGCTGGCTGGGCTGGCGGTCACGTTCCCTGTTTTCGTGATATGCAGCCCGGTGATAGTG CCGGCTGCGCTGGTGATCGGGATGTCTGTTATGGGGTTCTTGACTTCCGGTGCTTTCGGGATCACTGCGTTGTCGTCGTTGTCGTGGATGGCGAATTATA TCAGGAGGATGATTGGGATGCCGAGCGGGTCGGCGGTAAATCAGCTGGATTATGCGAAGAGGAGGGCTCAGGATGCTGTCGGGCAGGTGGGGCAGACAGT GGGGCAGAAGGTGAGGGATGTGGGGCAAACCGTGCAGAATAAGGCGCAGGAAGGTGGCAGGGGGACTACTCATCAGGAAGGTACCGCTAGGACTTGA
AA sequence Show only first row Show all	>Lus10028035 pacid=23181123 polypeptide=Lus10028035 locus=Lus10028035.g ID=Lus10028035.BGIv1.0 annot-version=v1.0 MATDRRYGAGYQDQQYGQYGGAGGRYPTTTTTTTGAGGMGDTVKSMLPEHGPSTQQILAVVTLLPLGGILLLFAGLTLAGTLAGLAVTFPVFVICSPVIV PAALVIGMSVMGFLTSGAFGITALSSLSWMANYIRRMIGMPSGSAVNQLDYAKRRAQDAVGQVGQTVGQKVRDVGQTVQNKAQEGGRGTTHQEGTART

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01570			Oleosin family protein (.1)		Lus10028035 [exp]	0	1
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	2.2	0.6336
					Lus10006913 [exp]	9.5	0.5087
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	20.5	0.6084
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	24.0	0.6020
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	29.5	0.5300
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	34.5	0.5571
					Lus10038177 [exp]	36.7	0.5307
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	46.6	0.5198
AT4G37860			SPT2 chromatin protein (.1)		Lus10007985 [exp]	59.2	0.4824
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	66.1	0.5067

Compare expression of checked genes

Lus10028035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.