Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77860 307 / 2e-102 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT2G29050 246 / 7e-78 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G12750 219 / 1e-68 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G63120 218 / 4e-68 ATRBL2 RHOMBOID-like 2 (.1) AT3G53780 216 / 2e-66 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT5G07250 207 / 1e-63 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT4G23070 169 / 2e-49 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G52580 159 / 1e-45 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G25290 61 / 6e-10 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 56 / 3e-08 Rhomboid-related intramembrane serine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003743 [exp] 703 / 0 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10023789 [exp] 244 / 3e-77 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 236 / 3e-74 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 234 / 4e-70 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10005464 [exp] 221 / 2e-68 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10024497 [exp] 217 / 1e-67 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 216 / 3e-67 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 187 / 2e-55 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10022969 [exp] 59 / 3e-09 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090400 [exp] 412 / 1e-142 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.001G241300 [exp] 252 / 2e-80 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.009G031900 [exp] 251 / 6e-80 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 228 / 5e-71 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.015G142000 [exp] 214 / 3e-66 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.003G122900 [exp] 213 / 3e-66 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.012G139600 [exp] 208 / 8e-64 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.001G108700 [exp] 194 / 7e-59 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.003G019500 [exp] 52 / 4e-07 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.017G112900 [exp] 45 / 8e-05 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10028036 pacid=23181219 polypeptide=Lus10028036 locus=Lus10028036.g ID=Lus10028036.BGIv1.0 annot-version=v1.0 ATGGAAGCAGTAGTAGAAATACTGAAGTCGGAGGCGAAGATCGAGATCGCTCCACCTCTTCCACCACTGCTTCCACCACTGCCGCCGCCGCCGTCATCGT CAAGCACCTTTTCTCTGGAGCTCACCGCTGATGACGACGTCACATCGGAGCATAAGACTCCATTCTTCAGATCTCGTTATCGCAGCAAACGGAGCGACAC CTGGATCATCTCCGCATTCGCCGTCACCTACGTCGCGGTCTTCGTCGTCACGATGTATGTGAACGACTGCCGTCATAACACACGCGGCGACTGCGCCGCG AAGGGACTGTCACGGATGTCTTTTCAGCATCTCTCGGAGAATCCATTCCTCGGTCCGTCTTCGTCAACGCTAGACAAAATGGGCGCTCTTCGAAGGACTT TACTGGAGAAACATCAAACCTGGCGCATCCTGTCATCTCCATGGCTCCACGCTGGCGTTTTCCACCTTGTCATAAATCTGATATGTATTCTCGTGATAGG AATATTCTTAGAGCAAGAGTATGGAGCAGTGAGAACTGGATTGATATACATAGGCACTGCTGTTTTTGGCACTTTAGTGGGAGCACTCTTTGTTCAGGAC AGCCCTGCTGTTACTTCATCCAGTGCTTTACATGGACTCGTTGGAGCTGCAATCTCTGCACTTACAAAGAACTGGGAATTGTACACCAGTAAGGCCAAAG CTGTGGCAGTGCTCACTTTCATCTTGGTCACTAATTTTGCCCTGGGTTTACCTTTCGTCTCTAACTACTCGAATGTTGGTGGATTTGTATCTGGGTCACT CCTCGGGTTCGCACTTCTGTACCGACCTCAGCCTGGCCAAACTTCCCAGAAATTGGCAGATACTAGTGGGTATCACACCAAGGGTTCTCTGAACTGGAAG CAGATGGTAAAGGTGGAAAGACCTGGACTAAGAAGCATCTCTCTTGTAATCTTCGCTCTACTAATTGCTGGATGCCTCGGGGGAGTAGTTCAGGGGATCA ATCTAGGATCCTACTGCCCATGGTGTCGATATCTCGACTGCATCCCATCCAGGAGTTGGAGTTGCAGTGACATGACTACTGATTGCGAGGCTAGTTTAGC CGCAATGGCAAGTGATGCTGAGCTAACTTTGACGTGTGTAGCAAATGGCAACTTCAGGCTATTCCCTTTCACAAACATCTCACAGGCAAGAGCTCAAGAC TTGTGCACTTTGATATGCAACCATTAG
AA sequence Show only first row Show all	>Lus10028036 pacid=23181219 polypeptide=Lus10028036 locus=Lus10028036.g ID=Lus10028036.BGIv1.0 annot-version=v1.0 MEAVVEILKSEAKIEIAPPLPPLLPPLPPPPSSSSTFSLELTADDDVTSEHKTPFFRSRYRSKRSDTWIISAFAVTYVAVFVVTMYVNDCRHNTRGDCAA KGLSRMSFQHLSENPFLGPSSSTLDKMGALRRTLLEKHQTWRILSSPWLHAGVFHLVINLICILVIGIFLEQEYGAVRTGLIYIGTAVFGTLVGALFVQD SPAVTSSSALHGLVGAAISALTKNWELYTSKAKAVAVLTFILVTNFALGLPFVSNYSNVGGFVSGSLLGFALLYRPQPGQTSQKLADTSGYHTKGSLNWK QMVKVERPGLRSISLVIFALLIAGCLGGVVQGINLGSYCPWCRYLDCIPSRSWSCSDMTTDCEASLAAMASDAELTLTCVANGNFRLFPFTNISQARAQD LCTLICNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10028036 [exp]	0	1
AT1G75717			unknown protein		Lus10034523 [exp]	6.5	0.8354
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10041188 [exp]	11.3	0.9001
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Lus10039962 [exp]	13.4	0.8171
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	15.3	0.8723
					Lus10039865 [exp]	24.3	0.8616
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Lus10027201 [exp]	25.4	0.8644
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	28.2	0.8659
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Lus10031013 [exp]	35.7	0.8621
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	40.6	0.8617
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	50.7	0.8574

Compare expression of checked genes

Lus10028036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.