Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36990 230 / 1e-67 unknown protein AT4G08510 182 / 2e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003744 [exp] 743 / 0 AT1G36990 361 / 9e-118 unknown protein Lus10042697 [exp] 412 / 2e-138 AT1G36990 352 / 4e-115 unknown protein Lus10029655 [exp] 405 / 1e-135 AT1G36990 364 / 9e-120 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172100 [exp] 390 / 8e-129 AT1G36990 250 / 3e-75 unknown protein Potri.002G089100 [exp] 385 / 3e-127 AT1G36990 281 / 5e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028037 pacid=23181179 polypeptide=Lus10028037 locus=Lus10028037.g ID=Lus10028037.BGIv1.0 annot-version=v1.0 ATGGAAAGAAGTGAACCCTCATTAGCTCCAGAATGGCTGAGAACCACTGCAAGTGTCTCAGGAGGTGGCAGTTCTATCCACCACTTTGCATCATCTTCTT CCCACTCAGATGTGTCTTCAAGGAGTCGGACGTCGAAGAGTATAACTGATTTAGATTCTCCTCGTCATGCGTTGTTGGATCGTACGTCTTCGTCGAATTC TCGGAGGAGTTCTAGTAGTAGTAATGGGTCTGGGAAGCATGCCTACAGTAGTTTTAGTAGGAATCACCGCGACAAGGATCGGGACAGGGACAAGGATAGG ATGAGTTACGTAGACCACTGGGATCGAGACCCTTCCGATTCTCTGGGAAGCATATTAACTGGTAGAATTGAGAAGGACGCACTAAGGCGGTCTCACTCGT TGGTGACCAGGAAACAGAGCGAGGTTTTGCCACGTAGGGACTTTAGGAATGGAAGTAGTAGCAGCAATCATCATGAAAATGGTAATGGCTTGATATCTGG TAAGGGGAATACTGGTCAGAAGGCTACTTTCGAGAAGGACTTTCCGTCTCTCGGTACCGAGGAGAGACCGTTTGTGCCGGAAGTAGTGAGGGTCTCGTCT CCTGGGTTAAGCAATGCTGTCCAGATCGTCTCAGCTGGGAGCTCGGTGTTGATCAATGGGGAGGGATGGACTTCTGCTCTGGCGGAAGTTCCTCCTCCTG CTGTTGGAACCAGTAGCATAAGTTCGGTACCAACCGTGCAAGTTATTGCTCCATCTGCATCTGCTCCTCCGATTTCCATGGCTGGTCTAAATATGGCTGA AACGTTGACTCAGTCGCCTGCAAGAGCTCGTTCAACCCCACAGTTAGCAGTTGAGACACAAAGGCTTGAGGAATTGGCTATTAAGCAGTCAAGGCAACTG AGACCAGTGACTCCTTCTTTGCCTAAGAGTTCGGTTAATGCATCTGACAAGTTAAAGCCGAAAGCAATAACGAGATCTGGGGAAACGAGTATATCTGCCA AGAATTTGCAGCAGCAGCAGCAGCCTTCATTTCATCCCACCAATCAATCCGTTCTTGGTGGAAAGCCCGAGGCACAAAAGTCATCACTTGGAAAGCTTTT TATCCTCAAGCCTGGAAGAGAAAACGGTGCATCCCATTCTCCAAAGGATGTTGCTAGTCCAACAAATAGTAATAGCAGAGTGGTAAATACTCAAGCTGCT CCGACTTCAGTTGTATCAGCATCTCCAAGGAGCCCGATTAACTCGAAAATCTTCTCCGGGGATCGCAGGCCAGCAGGCTCCAATGTGTTCAGTGCCGAAA AGAAGCCTTCGTTATCTCAGACTCAGAGTAGGAATGATTTCTTTAATCTGCTGAAGAAGAAAACCTCGGGGAACGCTTCGGCAGCCACAACAGATTCTTC AACCGGTGCTCTGACTGCTGCTGGCGGTGAGAAGCCGAGTTCTGTGAGTAAGGAATCGGTCAGTGATCCAGAGAAGAGTCGACAAGCTCTCGATAATGGC GATCAGTTAACTAGCAATGGCGGTGGTATTGATCCTCCTCACGAGGAAGTGCAGAGATTCTCCGAGGAAGAGGCTGCATTCCTCCACTCCCTTGGTTGGG AAGAAACTGCTGGAGAGGAAGAAGGCCTAACCGAAGAGGAGATCAATGCCTTCTACAAGGAGTACATGAAAATGAAGCCTTCGGCGAAAGTGAATGGCGA ATTGCAGCACCAGAAGTTGGTTGAATCTGAAGATTGA
AA sequence Show only first row Show all	>Lus10028037 pacid=23181179 polypeptide=Lus10028037 locus=Lus10028037.g ID=Lus10028037.BGIv1.0 annot-version=v1.0 MERSEPSLAPEWLRTTASVSGGGSSIHHFASSSSHSDVSSRSRTSKSITDLDSPRHALLDRTSSSNSRRSSSSSNGSGKHAYSSFSRNHRDKDRDRDKDR MSYVDHWDRDPSDSLGSILTGRIEKDALRRSHSLVTRKQSEVLPRRDFRNGSSSSNHHENGNGLISGKGNTGQKATFEKDFPSLGTEERPFVPEVVRVSS PGLSNAVQIVSAGSSVLINGEGWTSALAEVPPPAVGTSSISSVPTVQVIAPSASAPPISMAGLNMAETLTQSPARARSTPQLAVETQRLEELAIKQSRQL RPVTPSLPKSSVNASDKLKPKAITRSGETSISAKNLQQQQQPSFHPTNQSVLGGKPEAQKSSLGKLFILKPGRENGASHSPKDVASPTNSNSRVVNTQAA PTSVVSASPRSPINSKIFSGDRRPAGSNVFSAEKKPSLSQTQSRNDFFNLLKKKTSGNASAATTDSSTGALTAAGGEKPSSVSKESVSDPEKSRQALDNG DQLTSNGGGIDPPHEEVQRFSEEEAAFLHSLGWEETAGEEEGLTEEEINAFYKEYMKMKPSAKVNGELQHQKLVESED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36990			unknown protein		Lus10028037 [exp]	0	1
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	1.4	0.9185
AT1G63670			Protein of unknown function (D...		Lus10002008 [exp]	1.7	0.9044
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	4.4	0.9220
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10004694 [exp]	4.9	0.8723
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	11.6	0.8759
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	12.1	0.8863
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	13.9	0.9020
AT1G69550			disease resistance protein (TI...		Lus10038482 [exp]	19.7	0.8427
AT5G06560			Protein of unknown function, D...		Lus10016203 [exp]	19.9	0.8995
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	23.5	0.8933

Compare expression of checked genes

Lus10028037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.