Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08500 397 / 1e-131 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08480 367 / 4e-118 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G08470 359 / 1e-117 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G12020 330 / 3e-99 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT1G63700 251 / 2e-73 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 241 / 8e-72 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 226 / 2e-65 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G09000 223 / 8e-65 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 220 / 5e-64 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G06030 207 / 7e-59 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042698 [exp] 612 / 0 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 611 / 0 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10003745 [exp] 591 / 0 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10042750 [exp] 437 / 6e-152 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10027496 [exp] 250 / 4e-73 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 249 / 9e-73 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 249 / 1e-72 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 246 / 3e-72 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 240 / 1e-68 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172200 [exp] 608 / 0 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.002G088900 [exp] 588 / 0 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.015G146700 [exp] 256 / 3e-75 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 247 / 7e-74 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.012G143900 [exp] 251 / 2e-73 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 251 / 3e-73 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 244 / 8e-73 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.003G129000 [exp] 249 / 1e-72 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G039800 [exp] 221 / 5e-64 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 215 / 1e-61 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028038 pacid=23181208 polypeptide=Lus10028038 locus=Lus10028038.g ID=Lus10028038.BGIv1.0 annot-version=v1.0 ATGCGGCCAAACACATCGACTACGACGCAGCCTCCTTCCCTTCTTCCCTCGACGAGCCGTCGTCGTCTTCTTCGTCTCTGGTCACTTGATCGCTTGATTT GCCGATCGCTTGATTTGCAGGATCGGACGAGTTTCCGGATCGAAGGGAACGAGGGTGAGCTGGACCGCATTTGTCGGAGCCTTGGGCTCAATGGTCCCGA TGATTTTGCAATCCCGGCAGCTGCTTGGGAGGCCATGAAGCGGAGGTCCGCCTCCGACCTTCTTCCTAGGGTTAGAGGATTGCGTGAGAGCGACGAAGAC GATGGTGATGGTTCTAAGGATGCTGAAGTGGTGAAGAATGAGAGTGACGTATGTGCAGGGCTTTTGGATAGGGTTAGAATTGAGGATGATGTTACTGAGG ACTTGGCTGAATCGGCCGGGTTGAACAGGCGCTGCGGTGCCGGTGGTGGAGTGGCGGGAGGAATTAGAGGCGTCCGTCCGCCTTTGCTAAGGCCGCCGCC TTCGATGAACTTGCCGCCTGTGGACGCCGCGGGATCAACGTGGGATATATTGAGGGATTTCGGGCCTCAAAATGGGAGATTCTTGTTGGGGGCGCTTGAC AGAATTGTGAGTTCTGATGATGAGGAGAAGGACGAAGGAGAGGAAGGGGTGAATGTGTCCAGGGAACCAGAAGGAGAAGAAGAAGATGAGGGTTTGGTGA GAGTAGGGGTAACTTCTGTAATGTCGGAATCTTGTTCGTTTACCACTTCAAATGACGACGATTCTTCGAGCTCTACCACGGAACCGATGTCGAATATCTC ACCTAATGGGAGATTCAGGAGGATTATCACCGAATGGGATAAAAGAGACCTTCTGGGGCGTGGCTCGTTTGGATCCGTTTACGAGGGAATTTCTCACGAT GGATTCTTTTTTGCTATCAAAGAGGTTTCCTTGCTTGATCAAGGAAGCCAGGGAAGGCAAAGCGTATATCAACTAGAGCAGGAGATTGCTCTCTTAAGTA AGTTTGAGCATGAAAACATCGTTCAGTATTATGGCACGGACAAGGATGCATCACACTTGTACATCTTTCTAGAACTTGTTACTAAAGGTTCTCTTCTGAG TCTTTATCAGACATACCCTCTACGACATTCTCAGGTTTCAGCATACACTAGGCAAATTCTTCATGGTTTGAAGTATCTCCATGACCGAGATGTGGTTCAC AGGGATATCAAGTGCGCCAATATACTAGTTGATGCAAATGGGTCCGTGAAGCTTGCAGATTTTGGACTGGCAAAGGCAACTAAACTGAATGATGTGAAAT CATGCAAGGGGACTGCATTTTGGATGGCACCTGAGGTTGTTAATGGGAAAAGCCAAGGATATGGGCTTCCAGCTGATATCTGGAGCCTCGGATGTACAGT GCTGGAGATGTTAACTCGTCAGATTCCGTATTCTGATTTAGATGGCCCGATGACGGCATTGTTCAAGATTGGCAGAGGCATACCCCCTTCTGTCTCCGAG GCTCTGTCGAAAGATGCACGAGATTTCATTCTGAAATGCCTCCAAGTCAATGCGGCTGATCGTCCCACTGCTGCTCAGCTATTGGACCATCCATTCGTTC AACGGCCATTATCAACATCCATGGGCTACGGATCTCCTCATCCCGGGAGACGCTACCATTAG
AA sequence Show only first row Show all	>Lus10028038 pacid=23181208 polypeptide=Lus10028038 locus=Lus10028038.g ID=Lus10028038.BGIv1.0 annot-version=v1.0 MRPNTSTTTQPPSLLPSTSRRRLLRLWSLDRLICRSLDLQDRTSFRIEGNEGELDRICRSLGLNGPDDFAIPAAAWEAMKRRSASDLLPRVRGLRESDED DGDGSKDAEVVKNESDVCAGLLDRVRIEDDVTEDLAESAGLNRRCGAGGGVAGGIRGVRPPLLRPPPSMNLPPVDAAGSTWDILRDFGPQNGRFLLGALD RIVSSDDEEKDEGEEGVNVSREPEGEEEDEGLVRVGVTSVMSESCSFTTSNDDDSSSSTTEPMSNISPNGRFRRIITEWDKRDLLGRGSFGSVYEGISHD GFFFAIKEVSLLDQGSQGRQSVYQLEQEIALLSKFEHENIVQYYGTDKDASHLYIFLELVTKGSLLSLYQTYPLRHSQVSAYTRQILHGLKYLHDRDVVH RDIKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNGKSQGYGLPADIWSLGCTVLEMLTRQIPYSDLDGPMTALFKIGRGIPPSVSE ALSKDARDFILKCLQVNAADRPTAAQLLDHPFVQRPLSTSMGYGSPHPGRRYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10028038 [exp]	0	1
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	1.7	0.7645
AT2G43235			unknown protein		Lus10025487 [exp]	5.7	0.6730
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	9.4	0.7084
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	10.1	0.7200
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10003745 [exp]	12.0	0.7591
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	19.9	0.6791
AT1G55365			unknown protein		Lus10013409 [exp]	27.2	0.6341
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Lus10025518 [exp]	41.8	0.6657
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	48.9	0.6480
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	53.4	0.6064

Compare expression of checked genes

Lus10028038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.