Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14255 54 / 7e-08 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G02850 54 / 1e-07 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 53 / 2e-07 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G03430 50 / 9e-07 Ankyrin repeat family protein (.1) AT4G27780 49 / 3e-06 ACBP2 acyl-CoA binding protein 2 (.1) AT5G07270 47 / 1e-05 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G14230 47 / 1e-05 unknown protein AT3G12360 47 / 1e-05 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G02620 47 / 2e-05 ATANK1, ANK1 ankyrin-like1 (.1) AT4G35450 46 / 2e-05 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003748 [exp] 448 / 9e-157 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10037694 [exp] 63 / 2e-10 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 63 / 2e-10 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10033052 [exp] 52 / 5e-07 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10017765 [exp] 51 / 6e-07 AT2G26650 395 / 1e-130 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 52 / 7e-07 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10043298 [exp] 51 / 8e-07 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 51 / 1e-06 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015811 [exp] 50 / 2e-06 AT5G14230 727 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213200 [exp] 237 / 3e-74 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.017G135400 [exp] 62 / 3e-10 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 58 / 4e-09 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.010G161300 [exp] 52 / 2e-07 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.012G043000 [exp] 51 / 9e-07 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.010G185200 [exp] 49 / 4e-06 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 48 / 5e-06 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 47 / 1e-05 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G070700 [exp] 45 / 1e-05 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.018G047000 [exp] 46 / 2e-05 AT2G26210 217 / 4e-71 Ankyrin repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028039 pacid=23181160 polypeptide=Lus10028039 locus=Lus10028039.g ID=Lus10028039.BGIv1.0 annot-version=v1.0 ATGGATAGACTGGTAAGAACAGAGGTCAAAGAAGTGGAGATCATCTACAAGAAAGGCCAGAAATGCACCGCAAGCTTCAAGATCACCAACCTTATGCACA CTATGTCTGTAGCGATCTCTCTGTCAACCACCACCACCTTCACAAACTCTTCTTCTTCAGTTTTCTCCTTCTCACACCCTCTCTCTATCATCTCTCCACA ATCCACCGTCTCCTACGCCGTCGTTCTATCTTCCTCCTCCGACGTCCCTCCGCCTCTCTCCAGCGCCATCTCCGTCAGCTCCGCCATGCTCCCCACCGGC AAGGCCACCGCCGATGACCTCCGGAAGCTGTTCTCCGTCCCAGGGAGGCATGTCTTCCGCGACGCGGTTATTCCGATCTCCGTCGTCGGACATCAGGTCG CTGAGCGGATTGTTTCCGATTGTGGTGACGTGTACTCTTCTAAGTGTTTCGAGAAGGCTGTGAGTCGGTGCTCTGTAAGCCAGCTTAACGGTTTGCTCAG ATCTGCAGTTGCTTCCGGTAACGTTGATTTCGTACGGATATTGATCCAGAAGGGTGGGGATTTGAACCGGAGAGACTCTCAGGGACGGTCGTTGTTATCG TTAGCTGTGAAAGGCGGCCATGTCGATGTGGTGAAGCTTCTGATCGATTCCGGCTGCCGTGGCATCGTCGGCTCCGATTCGTGTCTCCACGACGCTGCGG CGGCTAACAGAGTCGATATCCTGCAGATTCTCACCGCCAATTTCAGATCTATCGACATGAACTCGACCGATTCGAGTGGGAGAACTCCGATCCACTTGGC GGCGATCAACGGCGGAAGGAGTAAGGAAGTGTTTGGGAGAAGGCGCGGAGGTGAACGTGAGGGATCAGAACGGGTGGTCGCCGTTACACAGGGCGGCGTT CAAGGGGAAAGCGGAGAGCGTCAAAGTGCTGTTGGGGAAAGGAGCACAGGTGGACGCAGTGGACGGAGATGGATACACGCCGCTGCATTGCGCGGTGGAG GCAGGGCAGCTGAAAGTGGCGGTGATGTTGATTGGACATGGAGCTAA
AA sequence Show only first row Show all	>Lus10028039 pacid=23181160 polypeptide=Lus10028039 locus=Lus10028039.g ID=Lus10028039.BGIv1.0 annot-version=v1.0 MDRLVRTEVKEVEIIYKKGQKCTASFKITNLMHTMSVAISLSTTTTFTNSSSSVFSFSHPLSIISPQSTVSYAVVLSSSSDVPPPLSSAISVSSAMLPTG KATADDLRKLFSVPGRHVFRDAVIPISVVGHQVAERIVSDCGDVYSSKCFEKAVSRCSVSQLNGLLRSAVASGNVDFVRILIQKGGDLNRRDSQGRSLLS LAVKGGHVDVVKLLIDSGCRGIVGSDSCLHDAAAANRVDILQILTANFRSIDMNSTDSSGRTPIHLAAINGGRSKEVFGRRRGGEREGSERVVAVTQGGV QGESGERQSAVGERSTGGRSGRRWIHAAALRGGGRAAESGGDVDWTWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	1.4	0.7977
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	2.4	0.7704
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	4.7	0.7961
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	6.2	0.7533
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	10.5	0.7655
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	11.4	0.7759
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10028656 [exp]	14.5	0.7121
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	15.4	0.7474
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	15.8	0.7725
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	16.1	0.7726

Compare expression of checked genes

Lus10028039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.