Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19540 152 / 8e-43 Protein of unknown function (DUF620) (.1) AT1G49840 151 / 2e-42 Protein of unknown function (DUF620) (.1) AT1G27690 140 / 2e-38 Protein of unknown function (DUF620) (.1) AT5G05840 111 / 8e-28 Protein of unknown function (DUF620) (.1) AT1G79420 106 / 4e-26 Protein of unknown function (DUF620) (.1) AT5G06610 102 / 4e-25 Protein of unknown function (DUF620) (.1) AT5G66740 98 / 2e-23 Protein of unknown function (DUF620) (.1) AT1G75160 97 / 8e-23 Protein of unknown function (DUF620) (.1) AT3G55720 92 / 6e-21 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026605 [exp] 171 / 4e-52 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 172 / 2e-50 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 152 / 6e-43 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 151 / 2e-42 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10028069 [exp] 125 / 1e-35 ND / Lus10008159 [exp] 103 / 1e-25 ND / Lus10028070 [exp] 101 / 1e-25 AT3G19540 104 / 1e-21 Protein of unknown function (DUF620) (.1) Lus10008157 [exp] 99 / 2e-24 ND 38 / 0.006 Lus10040241 [exp] 100 / 1e-23 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297500 [exp] 166 / 7e-48 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 162 / 1e-46 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 155 / 6e-44 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 114 / 3e-29 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 110 / 1e-27 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 110 / 1e-27 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 107 / 1e-26 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 102 / 7e-25 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 96 / 1e-22 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 96 / 2e-22 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10028040 pacid=23181135 polypeptide=Lus10028040 locus=Lus10028040.g ID=Lus10028040.BGIv1.0 annot-version=v1.0 ATGGAGACGACGGGAGAGCCAGAGTTCCTTTCTGCAGTGAAATTAAAGAGCTATGAACCCAGTTGGACGGTGTTTCAGCCTAGAGTCTCTGGCTGGCCTA CTCCGATTCCAAGGTACGACAATTTTCGAGGTATCTACGATGGAGGATTCGATTGCTGGGTTCAGACGAGTGGTAATCACTTGGATTGTGTCTTCAATTC CTCCTATCCTAGCTTTCTCTTCTCTACCATTAATTCATTGCATCTGTGCTTACTAACTTACTTGTTCGCTTGGTTGAACCAACAAAGGAATCCCAAGCCT TGGATTAACAAGGTGGTCGTTGAGTTGCGTTCGGAAGAAGCAGAATGCAGTGAAACTCCTGTGACGCTGTTAATGGAAGGTCCCGATGCTGACGGAGAAA CGGACCTGGAACCCGCCTGGTTGGGTTTGGACCAGTGGATGAAAGGACAGGGTCTTGATCCAAGAACCACTGCAAGCTTATTTGCTAAAGCAATGTGCAT AGGGGAGAAGAAGATTAATGGCGAAGATTGCTATATCCTGGAGCTGGTTGCTCATCCCTGGACATTCAATGCCAGGAAGGATTGTAATTTGACCCGAATC CAATCCATTGGCCGGGATCCAGTCTACTGGGAGACCACAATCAATTCGTTCCTCCTGATCGCACAGTCTGGGCATTCTGTGGTGACCCTGAACAAATATG GGGATGTGGTTATGAGGAATAACAAGACGAAGATGGAAGAAGCTTGGACCATTGAGGTAGTGGCTTTCAATGTTCCAGATCTCTCAGTTGACTCTTTCAT CCCTCCGGTGGCTATACAGAGTTGCAGCGATTGA
AA sequence Show only first row Show all	>Lus10028040 pacid=23181135 polypeptide=Lus10028040 locus=Lus10028040.g ID=Lus10028040.BGIv1.0 annot-version=v1.0 METTGEPEFLSAVKLKSYEPSWTVFQPRVSGWPTPIPRYDNFRGIYDGGFDCWVQTSGNHLDCVFNSSYPSFLFSTINSLHLCLLTYLFAWLNQQRNPKP WINKVVVELRSEEAECSETPVTLLMEGPDADGETDLEPAWLGLDQWMKGQGLDPRTTASLFAKAMCIGEKKINGEDCYILELVAHPWTFNARKDCNLTRI QSIGRDPVYWETTINSFLLIAQSGHSVVTLNKYGDVVMRNNKTKMEEAWTIEVVAFNVPDLSVDSFIPPVAIQSCSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	0	1
					Lus10021782 [exp]	2.0	1.0000
					Lus10023587 [exp]	2.8	1.0000
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	3.5	1.0000
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	4.0	1.0000
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	5.0	1.0000
					Lus10007927 [exp]	5.5	1.0000
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	5.9	1.0000
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	6.2	0.9977
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	6.3	1.0000
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	6.7	1.0000

Compare expression of checked genes

Lus10028040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.