Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12020 132 / 9e-34 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT5G36930 126 / 7e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 125 / 1e-31 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 118 / 3e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G51560 111 / 6e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 111 / 8e-27 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G11250 109 / 3e-26 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G40910 107 / 2e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 105 / 7e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38350 104 / 2e-24 Disease resistance protein (NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003749 [exp] 459 / 9e-152 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 243 / 2e-72 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 176 / 5e-49 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 168 / 2e-46 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 161 / 5e-44 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 159 / 3e-43 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 142 / 2e-37 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 119 / 2e-29 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 107 / 2e-25 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069200 [exp] 258 / 8e-78 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 238 / 2e-70 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 233 / 5e-69 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 229 / 1e-67 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G098550 [exp] 229 / 2e-67 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 227 / 1e-66 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 226 / 2e-66 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 224 / 1e-65 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 218 / 1e-63 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 169 / 8e-47 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028042 pacid=23181223 polypeptide=Lus10028042 locus=Lus10028042.g ID=Lus10028042.BGIv1.0 annot-version=v1.0 ATGAATGTTCTGAATATGAGTTTTGATGGGTTGAATGAAGATGAAAAAAATATATTTCTGGACATTGCATGTTTCTCCAAGGGGAAAGATGTAAGTGATG GGAGTAGGATTCTGAGTTCATGTGGATTCTCTGCTGAGAGTGGATTTGAAGCTCTTGCTGCCAAGTCCTTTCTGACAACTTGTTATGGGCAATTGGAGAT GCATGACTTATTGCAAGAAATGGGGAGAGAAATTGTTCGCTGTAATGATCCTGGGAAGCGCAGTCGTCTATGGCGTCCTGACGATGTGTTCAATGTCTTG GAGATCGCTACAGGAAGAAAAAAGGTGGAAGCAATAATGTTGGATTTGCCAAGCAAAGATGCTAATAAGGTACTTCGGAGCTGCAATGCGAATACTTTCG AAAAGATGTCCGGACTGAGTAACATCAAGCAACTCTATTGTGGAAACACCAAGAATTCCAAAAATTTGAAAGTGATGAACCTGAGCCACTCTCAGAAGCT GATCGAGACACCAGATTTCACCGCTATCCCGAATGTGGAGAGGCTAGAATTTGAGGACTGTACTAATCTGACCAAGATTCATCCATCGATAGTCCATCTC GAAAAGCTCGTCCAGCTCAACTTCAATGGCTGCACCAACATCAAGAACTTCCCACGTACTATTGGAAGGAAAAAAACGACATCATTACAGGAACTTCTAC TCTACAAGACCAACATCCAGGAACTCCCCGATTCGATCAAATTGTTCACCAGACTATCAAAACTGAGCCTCAAAGACTGCAAGAGCCTCAAGATTTTCCC AATGGGGATTATTAAGTTAAAGAGCTTGAAAGTTTTCAACCTGTCAGGATGTTCTCAGCTTGACAATGTCCCCAAAAAAATGGGAGATTTGGAGAGCTTG GAGGAGCTTGATGTGAGCGGAACCGCCATCAGAAACCCTCCCGACTCAGTTTTCAGCCTCGGGAATATGAAAATTCTATCCTTTTGA
AA sequence Show only first row Show all	>Lus10028042 pacid=23181223 polypeptide=Lus10028042 locus=Lus10028042.g ID=Lus10028042.BGIv1.0 annot-version=v1.0 MNVLNMSFDGLNEDEKNIFLDIACFSKGKDVSDGSRILSSCGFSAESGFEALAAKSFLTTCYGQLEMHDLLQEMGREIVRCNDPGKRSRLWRPDDVFNVL EIATGRKKVEAIMLDLPSKDANKVLRSCNANTFEKMSGLSNIKQLYCGNTKNSKNLKVMNLSHSQKLIETPDFTAIPNVERLEFEDCTNLTKIHPSIVHL EKLVQLNFNGCTNIKNFPRTIGRKKTTSLQELLLYKTNIQELPDSIKLFTRLSKLSLKDCKSLKIFPMGIIKLKSLKVFNLSGCSQLDNVPKKMGDLESL EELDVSGTAIRNPPDSVFSLGNMKILSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10028042 [exp]	0	1

Compare expression of checked genes

Lus10028042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.