Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 59 / 5e-09 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 58 / 1e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 56 / 6e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17880 55 / 9e-08 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT4G14370 53 / 4e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G57650 52 / 8e-07 ATP binding (.1.2) AT1G63750 51 / 1e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G51560 51 / 1e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19530 51 / 2e-06 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 51 / 2e-06 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003749 [exp] 651 / 0 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 123 / 1e-29 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 72 / 4e-13 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042753 [exp] 69 / 2e-12 AT4G12010 121 / 3e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 66 / 4e-11 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005171 [exp] 57 / 4e-08 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 55 / 1e-07 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10016029 [exp] 51 / 2e-06 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024150 [exp] 50 / 3e-06 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098000 [exp] 110 / 1e-25 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103101 [exp] 109 / 3e-25 AT4G12010 236 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G104901 [exp] 109 / 4e-25 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 108 / 7e-25 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 108 / 8e-25 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 107 / 2e-24 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097832 [exp] 103 / 2e-23 AT4G12010 148 / 8e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097000 [exp] 103 / 2e-23 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 101 / 1e-22 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 99 / 9e-22 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028043 pacid=23181105 polypeptide=Lus10028043 locus=Lus10028043.g ID=Lus10028043.BGIv1.0 annot-version=v1.0 ATGAACTTGGCAAACTGTGGGTTAGGAGAAGGTGATATTCCAAGTGAGCTTGGAAAGTTGCCATCTTTACATTCTCTGGATCTTAGTGGTATTAGTTTTG TTAGCCTGCCAGATATTACGGAGCTTTCCAGGTTGCATGAGCTGCACTTGAAGGACTGTAAGATGCTGAAGTTTTTGCCAGAATTTCCATCAGAGATCAA CTATGTGGTTGTGAATTGTTGCAACTCGTTGGAAAAGCCTCCCAACCCGGTTAAGCTACGCAGCAACTTGTTTTTCTTGGAAGGGTTTGACTGTCCTAAG TTGCAGAATGGTAAAAAAGATGTTGGCTTTTCCATGTTCCTAAGATATCTTCGGGGATGGTGGGATACTCCTCTCCCAAGGGAAAGATCAGGAATTGTAG TTCCCGGAAGAACGATTCCAGGGTGGTTCAATTGTCCGAGTGAAGGGACTTCAGTGAAGATACGAATCCCATCACATTATCGTGAGACGAATTTCAATGA TCCTGATAGCCATCATGACATAATGGGGCTTGCATTTTGCATAGCTCTCAAAGTGATGACTGAACCTCATGATAATCAAGGTACTGATCATGCAGTGCAT CAGCAGGATTCACCAGGCGACGAAGAACCACATGATGAAGAAATGGAAGGCTATTCGTCAGAAGAATCAGTTGACATGGATGATGATACTGATGAAGAAG TGTACAATCAAGATTCATCATCAACAACACTAGAAATAGATGAATATTCTTATGTTTCATACGATGAGGATGACGGCGATGAAGAAATGGAAGACTACTA CAATTGTCCTGACGGAGATGGTCAGGATAATAGCTTTTCAAGAAAGAGGAAGTACTCAACCAATGCAGAAGCAGTGGCAGATACAGGGAATCCCTCAACC GGGCCGAGGCCCAACTCATTTTCAGAAGAAGAATGTGGTGGTGGTGGTGAAGAAGGAAAGCATCTATGGTACTTCGTCGTGCCATACTACAACTTTACAG AGTATATGATAGGGCAAAGCCATCTCTATGTCGAGCTTGAAGGGTGCTCAAAACTGAAAGTGATCAGGACCAGATGTCGTCTGGTTTTAAATGGAGAAAT TGAAGAAGAAGAAGAGGCAACAGAAAGTAGCGATGATGATGGAGAAGAATACTGTGGTGGTAATGGAGATGAGAAGGAGAAAGATTGTCACAAAAGGGCT TCTCCTTACAACATATGTTACTATGAAGACAAGATGATGCTGATAGGAATGTACTTTTTCTACTCCACCAACTCATCATCATTATGGTCCAGTATTTCGA GTCGAAACGATCGTGCTTCTTTGGAGTTTATATATACTGCCTATAAAGGCAAAATAATTATATATCAAACGGTTACATTCTAA
AA sequence Show only first row Show all	>Lus10028043 pacid=23181105 polypeptide=Lus10028043 locus=Lus10028043.g ID=Lus10028043.BGIv1.0 annot-version=v1.0 MNLANCGLGEGDIPSELGKLPSLHSLDLSGISFVSLPDITELSRLHELHLKDCKMLKFLPEFPSEINYVVVNCCNSLEKPPNPVKLRSNLFFLEGFDCPK LQNGKKDVGFSMFLRYLRGWWDTPLPRERSGIVVPGRTIPGWFNCPSEGTSVKIRIPSHYRETNFNDPDSHHDIMGLAFCIALKVMTEPHDNQGTDHAVH QQDSPGDEEPHDEEMEGYSSEESVDMDDDTDEEVYNQDSSSTTLEIDEYSYVSYDEDDGDEEMEDYYNCPDGDGQDNSFSRKRKYSTNAEAVADTGNPST GPRPNSFSEEECGGGGEEGKHLWYFVVPYYNFTEYMIGQSHLYVELEGCSKLKVIRTRCRLVLNGEIEEEEEATESSDDDGEEYCGGNGDEKEKDCHKRA SPYNICYYEDKMMLIGMYFFYSTNSSSLWSSISSRNDRASLEFIYTAYKGKIIIYQTVTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10028043 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10009924 [exp]	1.0	0.9428
AT1G06645			2-oxoglutarate (2OG) and Fe(II...		Lus10033876 [exp]	1.4	0.9115
					Lus10013963 [exp]	11.7	0.8657
					Lus10021816 [exp]	12.3	0.8310
					Lus10025503 [exp]	18.0	0.8049
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009399 [exp]	20.0	0.8120
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	24.2	0.7262
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	25.4	0.7983
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	27.0	0.7940
					Lus10006918 [exp]	28.6	0.7940

Compare expression of checked genes

Lus10028043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.